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FAM131A (family with sequence similarity 131, member A)

Identity

Alias_namesC3orf40
chromosome 3 open reading frame 40
family with sequence similarity 131, member A
Alias_symbol (synonym)MGC21688
Other aliasFLAT715
PRO1378
HGNC (Hugo) FAM131A
LocusID (NCBI) 131408
Atlas_Id 63016
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184053717 and ends at 184064063 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM131A (3q27.1) / NAA50 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM131A   28308
Cards
Entrez_Gene (NCBI)FAM131A  131408  family with sequence similarity 131, member A
AliasesC3orf40; FLAT715; PRO1378
GeneCards (Weizmann)FAM131A
Ensembl hg19 (Hinxton)ENSG00000175182 [Gene_View]  chr3:184053717-184064063 [Contig_View]  FAM131A [Vega]
Ensembl hg38 (Hinxton)ENSG00000175182 [Gene_View]  chr3:184053717-184064063 [Contig_View]  FAM131A [Vega]
ICGC DataPortalENSG00000175182
TCGA cBioPortalFAM131A
AceView (NCBI)FAM131A
Genatlas (Paris)FAM131A
WikiGenes131408
SOURCE (Princeton)FAM131A
Genetics Home Reference (NIH)FAM131A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM131A  -     chr3:184053717-184064063 +  3q27.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM131A  -     3q27.1   [Description]    (hg38-Dec_2013)
EnsemblFAM131A - 3q27.1 [CytoView hg19]  FAM131A - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIFAM131A [Mapview hg19]  FAM131A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024378 AK126656 AY358435 BC026221 BC037299
RefSeq transcript (Entrez)NM_001171093 NM_144635
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)FAM131A
Cluster EST : UnigeneHs.591307 [ NCBI ]
CGAP (NCI)Hs.591307
Alternative Splicing GalleryENSG00000175182
Gene ExpressionFAM131A [ NCBI-GEO ]   FAM131A [ EBI - ARRAY_EXPRESS ]   FAM131A [ SEEK ]   FAM131A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM131A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131408
GTEX Portal (Tissue expression)FAM131A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXB0
Splice isoforms : SwissVarQ6UXB0
PhosPhoSitePlusQ6UXB0
Domains : Interpro (EBI)FAM131   
Domain families : Pfam (Sanger)FAM131 (PF15010)   
Domain families : Pfam (NCBI)pfam15010   
Conserved Domain (NCBI)FAM131A
DMDM Disease mutations131408
Blocks (Seattle)FAM131A
SuperfamilyQ6UXB0
Human Protein AtlasENSG00000175182
Peptide AtlasQ6UXB0
HPRD14481
IPIIPI00412618   IPI00152014   IPI00924965   IPI00925192   IPI00792355   IPI00925678   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXB0
IntAct (EBI)Q6UXB0
FunCoupENSG00000175182
BioGRIDFAM131A
STRING (EMBL)FAM131A
ZODIACFAM131A
Ontologies - Pathways
QuickGOQ6UXB0
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkFAM131A
Atlas of Cancer Signalling NetworkFAM131A
Wikipedia pathwaysFAM131A
Orthology - Evolution
OrthoDB131408
GeneTree (enSembl)ENSG00000175182
Phylogenetic Trees/Animal Genes : TreeFamFAM131A
HOVERGENQ6UXB0
HOGENOMQ6UXB0
Homologs : HomoloGeneFAM131A
Homology/Alignments : Family Browser (UCSC)FAM131A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM131A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM131A
dbVarFAM131A
ClinVarFAM131A
1000_GenomesFAM131A 
Exome Variant ServerFAM131A
ExAC (Exome Aggregation Consortium)FAM131A (select the gene name)
Genetic variants : HAPMAP131408
Genomic Variants (DGV)FAM131A [DGVbeta]
DECIPHER (Syndromes)3:184053717-184064063  ENSG00000175182
CONAN: Copy Number AnalysisFAM131A 
Mutations
ICGC Data PortalFAM131A 
TCGA Data PortalFAM131A 
Broad Tumor PortalFAM131A
OASIS PortalFAM131A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM131A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM131A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM131A
DgiDB (Drug Gene Interaction Database)FAM131A
DoCM (Curated mutations)FAM131A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM131A (select a term)
intoGenFAM131A
Cancer3DFAM131A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM131A
Genetic Testing Registry FAM131A
NextProtQ6UXB0 [Medical]
TSGene131408
GENETestsFAM131A
Huge Navigator FAM131A [HugePedia]
snp3D : Map Gene to Disease131408
BioCentury BCIQFAM131A
ClinGenFAM131A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131408
Chemical/Pharm GKB GenePA162386054
Clinical trialFAM131A
Miscellaneous
canSAR (ICR)FAM131A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM131A
EVEXFAM131A
GoPubMedFAM131A
iHOPFAM131A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:29 CET 2017

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