Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM131C (family with sequence similarity 131 member C)

Identity

Alias_namesC1orf117
chromosome 1 open reading frame 117
family with sequence similarity 131, member C
Alias_symbol (synonym)FLJ36766
Other alias
HGNC (Hugo) FAM131C
LocusID (NCBI) 348487
Atlas_Id 63017
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16057769 and ends at 16073632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		ZBTB17 (1p36.13) / FAM131C (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM131C   26717
Cards
Entrez_Gene (NCBI)FAM131C  348487  family with sequence similarity 131 member C
AliasesC1orf117
GeneCards (Weizmann)FAM131C
Ensembl hg19 (Hinxton)ENSG00000185519 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185519 [Gene_View]  chr1:16057769-16073632 [Contig_View]  FAM131C [Vega]
ICGC DataPortalENSG00000185519
TCGA cBioPortalFAM131C
AceView (NCBI)FAM131C
Genatlas (Paris)FAM131C
WikiGenes348487
SOURCE (Princeton)FAM131C
Genetics Home Reference (NIH)FAM131C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM131C  -     chr1:16057769-16073632 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM131C  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblFAM131C - 1p36.13 [CytoView hg19]  FAM131C - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIFAM131C [Mapview hg19]  FAM131C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094085 AL529663 BC016848 BC037394 BG751253
RefSeq transcript (Entrez)NM_182623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM131C
Cluster EST : UnigeneHs.126825 [ NCBI ]
CGAP (NCI)Hs.126825
Alternative Splicing GalleryENSG00000185519
Gene ExpressionFAM131C [ NCBI-GEO ]   FAM131C [ EBI - ARRAY_EXPRESS ]   FAM131C [ SEEK ]   FAM131C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM131C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348487
GTEX Portal (Tissue expression)FAM131C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AQ9
Splice isoforms : SwissVarQ96AQ9
PhosPhoSitePlusQ96AQ9
Domains : Interpro (EBI)FAM131   
Domain families : Pfam (Sanger)FAM131 (PF15010)   
Domain families : Pfam (NCBI)pfam15010   
Conserved Domain (NCBI)FAM131C
DMDM Disease mutations348487
Blocks (Seattle)FAM131C
SuperfamilyQ96AQ9
Human Protein AtlasENSG00000185519
Peptide AtlasQ96AQ9
HPRD08779
IPIIPI00254518   
Protein Interaction databases
DIP (DOE-UCLA)Q96AQ9
IntAct (EBI)Q96AQ9
FunCoupENSG00000185519
BioGRIDFAM131C
STRING (EMBL)FAM131C
ZODIACFAM131C
Ontologies - Pathways
QuickGOQ96AQ9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM131C
Atlas of Cancer Signalling NetworkFAM131C
Wikipedia pathwaysFAM131C
Orthology - Evolution
OrthoDB348487
GeneTree (enSembl)ENSG00000185519
Phylogenetic Trees/Animal Genes : TreeFamFAM131C
HOVERGENQ96AQ9
HOGENOMQ96AQ9
Homologs : HomoloGeneFAM131C
Homology/Alignments : Family Browser (UCSC)FAM131C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM131C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM131C
dbVarFAM131C
ClinVarFAM131C
1000_GenomesFAM131C 
Exome Variant ServerFAM131C
ExAC (Exome Aggregation Consortium)FAM131C (select the gene name)
Genetic variants : HAPMAP348487
Genomic Variants (DGV)FAM131C [DGVbeta]
DECIPHERFAM131C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM131C 
Mutations
ICGC Data PortalFAM131C 
TCGA Data PortalFAM131C 
Broad Tumor PortalFAM131C
OASIS PortalFAM131C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM131C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM131C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM131C
DgiDB (Drug Gene Interaction Database)FAM131C
DoCM (Curated mutations)FAM131C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM131C (select a term)
intoGenFAM131C
Cancer3DFAM131C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM131C
Genetic Testing Registry FAM131C
NextProtQ96AQ9 [Medical]
TSGene348487
GENETestsFAM131C
Target ValidationFAM131C
Huge Navigator FAM131C [HugePedia]
snp3D : Map Gene to Disease348487
BioCentury BCIQFAM131C
ClinGenFAM131C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348487
Chemical/Pharm GKB GenePA162386082
Clinical trialFAM131C
Miscellaneous
canSAR (ICR)FAM131C (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM131C
EVEXFAM131C
GoPubMedFAM131C
iHOPFAM131C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:35 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.