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FAM133B (family with sequence similarity 133, member B)

Identity

Alias_namesfamily with sequence similarity 133, member B
Alias_symbol (synonym)MGC40405
Other alias-
HGNC (Hugo) FAM133B
LocusID (NCBI) 257415
Atlas_Id 63020
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92190072 and ends at 92219708 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM133B (7q21.2) / CDK6 (7q21.2)FAM133B (7q21.2) / MDM2 (12q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM133B   28629
Cards
Entrez_Gene (NCBI)FAM133B  257415  family with sequence similarity 133, member B
Aliases
GeneCards (Weizmann)FAM133B
Ensembl hg19 (Hinxton)ENSG00000234545 [Gene_View]  chr7:92190072-92219708 [Contig_View]  FAM133B [Vega]
Ensembl hg38 (Hinxton)ENSG00000234545 [Gene_View]  chr7:92190072-92219708 [Contig_View]  FAM133B [Vega]
ICGC DataPortalENSG00000234545
TCGA cBioPortalFAM133B
AceView (NCBI)FAM133B
Genatlas (Paris)FAM133B
WikiGenes257415
SOURCE (Princeton)FAM133B
Genetics Home Reference (NIH)FAM133B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM133B  -     chr7:92190072-92219708 -  7q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM133B  -     7q21.2   [Description]    (hg38-Dec_2013)
EnsemblFAM133B - 7q21.2 [CytoView hg19]  FAM133B - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBIFAM133B [Mapview hg19]  FAM133B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125498 AK313692 AL833918 AM392992 AM393866
RefSeq transcript (Entrez)NM_001040057 NM_001288584 NM_152789
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)FAM133B
Cluster EST : UnigeneHs.489105 [ NCBI ]
CGAP (NCI)Hs.489105
Alternative Splicing GalleryENSG00000234545
Gene ExpressionFAM133B [ NCBI-GEO ]   FAM133B [ EBI - ARRAY_EXPRESS ]   FAM133B [ SEEK ]   FAM133B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM133B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257415
GTEX Portal (Tissue expression)FAM133B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKY9
Splice isoforms : SwissVarQ5BKY9
PhosPhoSitePlusQ5BKY9
Domains : Interpro (EBI)Fam133   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM133B
DMDM Disease mutations257415
Blocks (Seattle)FAM133B
SuperfamilyQ5BKY9
Human Protein AtlasENSG00000234545
Peptide AtlasQ5BKY9
HPRD17557
IPIIPI00556447   IPI00746130   IPI00902836   IPI00924638   IPI01012627   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKY9
IntAct (EBI)Q5BKY9
FunCoupENSG00000234545
BioGRIDFAM133B
STRING (EMBL)FAM133B
ZODIACFAM133B
Ontologies - Pathways
QuickGOQ5BKY9
Ontology : AmiGOpoly(A) RNA binding  
Ontology : EGO-EBIpoly(A) RNA binding  
NDEx NetworkFAM133B
Atlas of Cancer Signalling NetworkFAM133B
Wikipedia pathwaysFAM133B
Orthology - Evolution
OrthoDB257415
GeneTree (enSembl)ENSG00000234545
Phylogenetic Trees/Animal Genes : TreeFamFAM133B
HOVERGENQ5BKY9
HOGENOMQ5BKY9
Homologs : HomoloGeneFAM133B
Homology/Alignments : Family Browser (UCSC)FAM133B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM133B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM133B
dbVarFAM133B
ClinVarFAM133B
1000_GenomesFAM133B 
Exome Variant ServerFAM133B
ExAC (Exome Aggregation Consortium)FAM133B (select the gene name)
Genetic variants : HAPMAP257415
Genomic Variants (DGV)FAM133B [DGVbeta]
DECIPHER (Syndromes)7:92190072-92219708  ENSG00000234545
CONAN: Copy Number AnalysisFAM133B 
Mutations
ICGC Data PortalFAM133B 
TCGA Data PortalFAM133B 
Broad Tumor PortalFAM133B
OASIS PortalFAM133B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM133B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM133B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM133B
DgiDB (Drug Gene Interaction Database)FAM133B
DoCM (Curated mutations)FAM133B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM133B (select a term)
intoGenFAM133B
Cancer3DFAM133B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM133B
Genetic Testing Registry FAM133B
NextProtQ5BKY9 [Medical]
TSGene257415
GENETestsFAM133B
Huge Navigator FAM133B [HugePedia]
snp3D : Map Gene to Disease257415
BioCentury BCIQFAM133B
ClinGenFAM133B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257415
Chemical/Pharm GKB GenePA162386138
Clinical trialFAM133B
Miscellaneous
canSAR (ICR)FAM133B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM133B
EVEXFAM133B
GoPubMedFAM133B
iHOPFAM133B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:30 CET 2017

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