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FAM134A (family with sequence similarity 134 member A)

Identity

Alias_namesC2orf17
chromosome 2 open reading frame 17
family with sequence similarity 134, member A
Alias_symbol (synonym)MGC3035
Other aliasMAG-2
HGNC (Hugo) FAM134A
LocusID (NCBI) 79137
Atlas_Id 51255
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 220042939 and ends at 220050197 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM134A (2q35) / FAM46A (6q14.1)FAM134A (2q35) / RUNX1T1 (8q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM134A   28450
Cards
Entrez_Gene (NCBI)FAM134A  79137  family with sequence similarity 134 member A
AliasesC2orf17; MAG-2
GeneCards (Weizmann)FAM134A
Ensembl hg19 (Hinxton)ENSG00000144567 [Gene_View]  chr2:220042939-220050197 [Contig_View]  FAM134A [Vega]
Ensembl hg38 (Hinxton)ENSG00000144567 [Gene_View]  chr2:220042939-220050197 [Contig_View]  FAM134A [Vega]
ICGC DataPortalENSG00000144567
TCGA cBioPortalFAM134A
AceView (NCBI)FAM134A
Genatlas (Paris)FAM134A
WikiGenes79137
SOURCE (Princeton)FAM134A
Genetics Home Reference (NIH)FAM134A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM134A  -     chr2:220042939-220050197 +  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM134A  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblFAM134A - 2q35 [CytoView hg19]  FAM134A - 2q35 [CytoView hg38]
Mapping of homologs : NCBIFAM134A [Mapview hg19]  FAM134A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026155 AK074983 AK091011 AL136758 AL832843
RefSeq transcript (Entrez)NM_001321109 NM_001321110 NM_024293
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)FAM134A
Cluster EST : UnigeneHs.516707 [ NCBI ]
CGAP (NCI)Hs.516707
Alternative Splicing GalleryENSG00000144567
Gene ExpressionFAM134A [ NCBI-GEO ]   FAM134A [ EBI - ARRAY_EXPRESS ]   FAM134A [ SEEK ]   FAM134A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM134A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79137
GTEX Portal (Tissue expression)FAM134A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC44
Splice isoforms : SwissVarQ8NC44
PhosPhoSitePlusQ8NC44
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM134A
DMDM Disease mutations79137
Blocks (Seattle)FAM134A
SuperfamilyQ8NC44
Human Protein AtlasENSG00000144567
Peptide AtlasQ8NC44
HPRD12807
IPIIPI00301294   IPI00902997   IPI00915944   IPI00916843   IPI00917014   IPI00916516   IPI00917318   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC44
IntAct (EBI)Q8NC44
FunCoupENSG00000144567
BioGRIDFAM134A
STRING (EMBL)FAM134A
ZODIACFAM134A
Ontologies - Pathways
QuickGOQ8NC44
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM134A
Atlas of Cancer Signalling NetworkFAM134A
Wikipedia pathwaysFAM134A
Orthology - Evolution
OrthoDB79137
GeneTree (enSembl)ENSG00000144567
Phylogenetic Trees/Animal Genes : TreeFamFAM134A
HOVERGENQ8NC44
HOGENOMQ8NC44
Homologs : HomoloGeneFAM134A
Homology/Alignments : Family Browser (UCSC)FAM134A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM134A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM134A
dbVarFAM134A
ClinVarFAM134A
1000_GenomesFAM134A 
Exome Variant ServerFAM134A
ExAC (Exome Aggregation Consortium)FAM134A (select the gene name)
Genetic variants : HAPMAP79137
Genomic Variants (DGV)FAM134A [DGVbeta]
DECIPHER (Syndromes)2:220042939-220050197  ENSG00000144567
CONAN: Copy Number AnalysisFAM134A 
Mutations
ICGC Data PortalFAM134A 
TCGA Data PortalFAM134A 
Broad Tumor PortalFAM134A
OASIS PortalFAM134A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM134A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM134A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM134A
DgiDB (Drug Gene Interaction Database)FAM134A
DoCM (Curated mutations)FAM134A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM134A (select a term)
intoGenFAM134A
Cancer3DFAM134A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM134A
Genetic Testing Registry FAM134A
NextProtQ8NC44 [Medical]
TSGene79137
GENETestsFAM134A
Huge Navigator FAM134A [HugePedia]
snp3D : Map Gene to Disease79137
BioCentury BCIQFAM134A
ClinGenFAM134A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79137
Chemical/Pharm GKB GenePA162386165
Clinical trialFAM134A
Miscellaneous
canSAR (ICR)FAM134A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM134A
EVEXFAM134A
GoPubMedFAM134A
iHOPFAM134A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:22 CET 2017

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