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FAM134B (family with sequence similarity 134 member B)

Identity

Alias_namesfamily with sequence similarity 134
Alias_symbol (synonym)FLJ20152
JK1
Other aliasJK-1
HGNC (Hugo) FAM134B
LocusID (NCBI) 54463
Atlas_Id 49732
Location 5p15.1  [Link to chromosome band 5p15]
Location_base_pair Starts at 16473147 and ends at 16617167 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM134B (5p15.1) / CDH18 (5p14.3)FAM134B (5p15.1) / FAM134B (5p15.1)FAM134B (5p15.1) / TPPP (5p15.33)
MYO10 (5p15.1) / FAM134B (5p15.1)PARD3 (10p11.22) / FAM134B (5p15.1)FAM134B 5p15.1 / TPPP 5p15.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM134B   25964
LRG (Locus Reference Genomic)LRG_363
Cards
Entrez_Gene (NCBI)FAM134B  54463  family with sequence similarity 134 member B
AliasesJK-1; JK1
GeneCards (Weizmann)FAM134B
Ensembl hg19 (Hinxton)ENSG00000154153 [Gene_View]  chr5:16473147-16617167 [Contig_View]  FAM134B [Vega]
Ensembl hg38 (Hinxton)ENSG00000154153 [Gene_View]  chr5:16473147-16617167 [Contig_View]  FAM134B [Vega]
ICGC DataPortalENSG00000154153
TCGA cBioPortalFAM134B
AceView (NCBI)FAM134B
Genatlas (Paris)FAM134B
WikiGenes54463
SOURCE (Princeton)FAM134B
Genetics Home Reference (NIH)FAM134B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM134B  -     chr5:16473147-16617167 -  5p15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM134B  -     5p15.1   [Description]    (hg38-Dec_2013)
EnsemblFAM134B - 5p15.1 [CytoView hg19]  FAM134B - 5p15.1 [CytoView hg38]
Mapping of homologs : NCBIFAM134B [Mapview hg19]  FAM134B [Mapview hg38]
OMIM201300   613114   613115   
Gene and transcription
Genbank (Entrez)AI261750 AK000159 AK024920 AK025808 AK025832
RefSeq transcript (Entrez)NM_001034850 NM_019000
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_016644 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)FAM134B
Cluster EST : UnigeneHs.481704 [ NCBI ]
CGAP (NCI)Hs.481704
Alternative Splicing GalleryENSG00000154153
Gene ExpressionFAM134B [ NCBI-GEO ]   FAM134B [ EBI - ARRAY_EXPRESS ]   FAM134B [ SEEK ]   FAM134B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM134B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54463
GTEX Portal (Tissue expression)FAM134B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6L5
Splice isoforms : SwissVarQ9H6L5
PhosPhoSitePlusQ9H6L5
Domaine pattern : Prosite (Expaxy)RETICULON (PS50845)   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM134B
DMDM Disease mutations54463
Blocks (Seattle)FAM134B
SuperfamilyQ9H6L5
Human Protein AtlasENSG00000154153
Peptide AtlasQ9H6L5
HPRD07879
IPIIPI00549844   IPI00465357   IPI00965886   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6L5
IntAct (EBI)Q9H6L5
FunCoupENSG00000154153
BioGRIDFAM134B
STRING (EMBL)FAM134B
ZODIACFAM134B
Ontologies - Pathways
QuickGOQ9H6L5
Ontology : AmiGOprotein binding  Golgi apparatus  cis-Golgi network  sensory perception of pain  integral component of endoplasmic reticulum membrane  negative regulation of neuron apoptotic process  reticulophagy  
Ontology : EGO-EBIprotein binding  Golgi apparatus  cis-Golgi network  sensory perception of pain  integral component of endoplasmic reticulum membrane  negative regulation of neuron apoptotic process  reticulophagy  
NDEx NetworkFAM134B
Atlas of Cancer Signalling NetworkFAM134B
Wikipedia pathwaysFAM134B
Orthology - Evolution
OrthoDB54463
GeneTree (enSembl)ENSG00000154153
Phylogenetic Trees/Animal Genes : TreeFamFAM134B
HOVERGENQ9H6L5
HOGENOMQ9H6L5
Homologs : HomoloGeneFAM134B
Homology/Alignments : Family Browser (UCSC)FAM134B
Gene fusions - Rearrangements
Fusion : MitelmanFAM134B/CDH18 [5p15.1/5p14.3]  
Fusion : MitelmanFAM134B/TPPP [5p15.1/5p15.33]  [t(5;5)(p15;p15)]  
Fusion: TCGAFAM134B 5p15.1 TPPP 5p15.33 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM134B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM134B
dbVarFAM134B
ClinVarFAM134B
1000_GenomesFAM134B 
Exome Variant ServerFAM134B
ExAC (Exome Aggregation Consortium)FAM134B (select the gene name)
Genetic variants : HAPMAP54463
Genomic Variants (DGV)FAM134B [DGVbeta]
DECIPHER (Syndromes)5:16473147-16617167  ENSG00000154153
CONAN: Copy Number AnalysisFAM134B 
Mutations
ICGC Data PortalFAM134B 
TCGA Data PortalFAM134B 
Broad Tumor PortalFAM134B
OASIS PortalFAM134B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM134B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM134B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM134B
DgiDB (Drug Gene Interaction Database)FAM134B
DoCM (Curated mutations)FAM134B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM134B (select a term)
intoGenFAM134B
Cancer3DFAM134B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM201300    613114    613115   
Orphanet1290   
MedgenFAM134B
Genetic Testing Registry FAM134B
NextProtQ9H6L5 [Medical]
TSGene54463
GENETestsFAM134B
Huge Navigator FAM134B [HugePedia]
snp3D : Map Gene to Disease54463
BioCentury BCIQFAM134B
ClinGenFAM134B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54463
Chemical/Pharm GKB GenePA162386188
Clinical trialFAM134B
Miscellaneous
canSAR (ICR)FAM134B (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM134B
EVEXFAM134B
GoPubMedFAM134B
iHOPFAM134B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:22 CET 2017

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