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FAM13A (family with sequence similarity 13 member A)

Identity

Alias (NCBI)ARHGAP48
FAM13A1
HGNC (Hugo) FAM13A
HGNC Alias symbKIAA0914
ARHGAP48
HGNC Previous nameFAM13A1
HGNC Previous namefamily with sequence similarity 13, member A1
 family with sequence similarity 13, member A
LocusID (NCBI) 10144
Atlas_Id 55980
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 88725960 and ends at 89057185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BEX4 (Xq22.1) / FAM13A (4q22.1)FAM13A (4q22.1) / CRLF3 (17q11.2)FAM13A (4q22.1) / IGF1R (15q26.3)
MAPK10 (4q21.3) / FAM13A (4q22.1)SGPP2 (2q36.1) / FAM13A (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM13A   19367
Cards
Entrez_Gene (NCBI)FAM13A    family with sequence similarity 13 member A
AliasesARHGAP48; FAM13A1
GeneCards (Weizmann)FAM13A
Ensembl hg19 (Hinxton)ENSG00000138640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138640 [Gene_View]  ENSG00000138640 [Sequence]  chr4:88725960-89057185 [Contig_View]  FAM13A [Vega]
ICGC DataPortalENSG00000138640
TCGA cBioPortalFAM13A
AceView (NCBI)FAM13A
Genatlas (Paris)FAM13A
SOURCE (Princeton)FAM13A
Genetics Home Reference (NIH)FAM13A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM13A  -     chr4:88725960-89057185 -  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM13A  -     4q22.1   [Description]    (hg19-Feb_2009)
GoldenPathFAM13A - 4q22.1 [CytoView hg19]  FAM13A - 4q22.1 [CytoView hg38]
ImmunoBaseENSG00000138640
genome Data Viewer NCBIFAM13A [Mapview hg19]  
OMIM613299   
Gene and transcription
Genbank (Entrez)AB020721 AF009202 AI658916 AK027138 AK091328
RefSeq transcript (Entrez)NM_001015045 NM_001265578 NM_001265579 NM_001265580 NM_014883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM13A
Alternative Splicing GalleryENSG00000138640
Gene ExpressionFAM13A [ NCBI-GEO ]   FAM13A [ EBI - ARRAY_EXPRESS ]   FAM13A [ SEEK ]   FAM13A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM13A [ Firebrowse - Broad ]
GenevisibleExpression of FAM13A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10144
GTEX Portal (Tissue expression)FAM13A
Human Protein AtlasENSG00000138640-FAM13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94988   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94988  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94988
Splice isoforms : SwissVarO94988
PhosPhoSitePlusO94988
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)FAM13    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)FAM13A
Blocks (Seattle)FAM13A
SuperfamilyO94988
Human Protein Atlas [tissue]ENSG00000138640-FAM13A [tissue]
Peptide AtlasO94988
HPRD10944
IPIIPI00555975   IPI00966001   IPI00006680   IPI00964911   IPI00965848   IPI00964627   IPI00965709   IPI00965355   IPI00966704   IPI00963909   IPI00966939   IPI00966389   
Protein Interaction databases
DIP (DOE-UCLA)O94988
IntAct (EBI)O94988
BioGRIDFAM13A
STRING (EMBL)FAM13A
ZODIACFAM13A
Ontologies - Pathways
QuickGOO94988
Ontology : AmiGOGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkFAM13A
Atlas of Cancer Signalling NetworkFAM13A
Wikipedia pathwaysFAM13A
Orthology - Evolution
OrthoDB10144
GeneTree (enSembl)ENSG00000138640
Phylogenetic Trees/Animal Genes : TreeFamFAM13A
HOGENOMO94988
Homologs : HomoloGeneFAM13A
Homology/Alignments : Family Browser (UCSC)FAM13A
Gene fusions - Rearrangements
Fusion : QuiverFAM13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM13A [hg38]
dbVarFAM13A
ClinVarFAM13A
MonarchFAM13A
1000_GenomesFAM13A 
Exome Variant ServerFAM13A
GNOMAD BrowserENSG00000138640
Varsome BrowserFAM13A
Genomic Variants (DGV)FAM13A [DGVbeta]
DECIPHERFAM13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM13A 
Mutations
ICGC Data PortalFAM13A 
TCGA Data PortalFAM13A 
Broad Tumor PortalFAM13A
OASIS PortalFAM13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM13A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM13A
Mutations and Diseases : HGMDFAM13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM13A
DgiDB (Drug Gene Interaction Database)FAM13A
DoCM (Curated mutations)FAM13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM13A (select a term)
intoGenFAM13A
Cancer3DFAM13A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613299   
Orphanet7029   
DisGeNETFAM13A
MedgenFAM13A
Genetic Testing Registry FAM13A
NextProtO94988 [Medical]
GENETestsFAM13A
Target ValidationFAM13A
Huge Navigator FAM13A [HugePedia]
ClinGenFAM13A
Clinical trials, drugs, therapy
MyCancerGenomeFAM13A
Protein Interactions : CTD
Pharm GKB GenePA164719541
PharosO94988
Clinical trialFAM13A
Miscellaneous
canSAR (ICR)FAM13A (select the gene name)
HarmonizomeFAM13A
DataMed IndexFAM13A
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:20:51 CET 2021
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