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FAM13A-AS1 (FAM13A antisense RNA 1)

Identity

Alias_namesFAM13A1OS
FAM13AOS
FAM13A opposite strand (non-protein coding)
FAM13A antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)NCRNA00039
Other alias
HGNC (Hugo) FAM13A-AS1
LocusID (NCBI) 285512
Atlas_Id 54299
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 88709789 and ends at 88730103 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANP32E (1q21.2) / FAM13A-AS1 (4q22.1)FAM13A-AS1 (4q22.1) / FAM13A-AS1 (4q22.1)HERC3 (4q22.1) / FAM13A-AS1 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM13A-AS1   19370
Cards
Entrez_Gene (NCBI)FAM13A-AS1  285512  FAM13A antisense RNA 1
AliasesFAM13A1OS; FAM13AOS; NCRNA00039
GeneCards (Weizmann)FAM13A-AS1
Ensembl hg19 (Hinxton)ENSG00000248019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248019 [Gene_View]  chr4:88709789-88730103 [Contig_View]  FAM13A-AS1 [Vega]
ICGC DataPortalENSG00000248019
TCGA cBioPortalFAM13A-AS1
AceView (NCBI)FAM13A-AS1
Genatlas (Paris)FAM13A-AS1
WikiGenes285512
SOURCE (Princeton)FAM13A-AS1
Genetics Home Reference (NIH)FAM13A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM13A-AS1  -     chr4:88709789-88730103 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM13A-AS1  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM13A-AS1 - 4q22.1 [CytoView hg19]  FAM13A-AS1 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM13A-AS1 [Mapview hg19]  FAM13A-AS1 [Mapview hg38]
OMIM613300   
Gene and transcription
Genbank (Entrez)AK093650 AK126217 BN000087 DB305148
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM13A-AS1
Cluster EST : UnigeneHs.744957 [ NCBI ]
CGAP (NCI)Hs.744957
Alternative Splicing GalleryENSG00000248019
Gene ExpressionFAM13A-AS1 [ NCBI-GEO ]   FAM13A-AS1 [ EBI - ARRAY_EXPRESS ]   FAM13A-AS1 [ SEEK ]   FAM13A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM13A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285512
GTEX Portal (Tissue expression)FAM13A-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM13A-AS1
DMDM Disease mutations285512
Blocks (Seattle)FAM13A-AS1
Human Protein AtlasENSG00000248019
IPIIPI00445288   
Protein Interaction databases
FunCoupENSG00000248019
BioGRIDFAM13A-AS1
STRING (EMBL)FAM13A-AS1
ZODIACFAM13A-AS1
Ontologies - Pathways
Huge Navigator FAM13A-AS1 [HugePedia]
snp3D : Map Gene to Disease285512
BioCentury BCIQFAM13A-AS1
ClinGenFAM13A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285512
Chemical/Pharm GKB GenePA164719594
Clinical trialFAM13A-AS1
Miscellaneous
canSAR (ICR)FAM13A-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM13A-AS1
EVEXFAM13A-AS1
GoPubMedFAM13A-AS1
iHOPFAM13A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:07:41 CEST 2017

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