Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM13B (family with sequence similarity 13 member B)

Identity

Alias_namesC5orf5
FAM13B1
chromosome 5 open reading frame 5
family with sequence similarity 13, member B1
family with sequence similarity 13, member B
Alias_symbol (synonym)N61
KHCHP
ARHGAP49
Other alias
HGNC (Hugo) FAM13B
LocusID (NCBI) 51306
Atlas_Id 63034
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 137937916 and ends at 138033113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAV2 (7q31.2) / FAM13B (5q31.2)FAM13B (5q31.2) / CDC25C (5q31.2)FAM13B (5q31.2) / FAM13B (5q31.2)
FAM13B (5q31.2) / FNIP2 (4q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM13B   1335
Cards
Entrez_Gene (NCBI)FAM13B  51306  family with sequence similarity 13 member B
AliasesARHGAP49; C5orf5; FAM13B1; KHCHP; 
N61
GeneCards (Weizmann)FAM13B
Ensembl hg19 (Hinxton)ENSG00000031003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000031003 [Gene_View]  chr5:137937916-138033113 [Contig_View]  FAM13B [Vega]
ICGC DataPortalENSG00000031003
TCGA cBioPortalFAM13B
AceView (NCBI)FAM13B
Genatlas (Paris)FAM13B
WikiGenes51306
SOURCE (Princeton)FAM13B
Genetics Home Reference (NIH)FAM13B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM13B  -     chr5:137937916-138033113 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM13B  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblFAM13B - 5q31.2 [CytoView hg19]  FAM13B - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIFAM13B [Mapview hg19]  FAM13B [Mapview hg38]
OMIM609371   
Gene and transcription
Genbank (Entrez)AF157316 AF251038 AK130245 AK314224 AL833699
RefSeq transcript (Entrez)NM_001101800 NM_001101801 NM_016603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM13B
Cluster EST : UnigeneHs.567453 [ NCBI ]
CGAP (NCI)Hs.567453
Alternative Splicing GalleryENSG00000031003
Gene ExpressionFAM13B [ NCBI-GEO ]   FAM13B [ EBI - ARRAY_EXPRESS ]   FAM13B [ SEEK ]   FAM13B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51306
GTEX Portal (Tissue expression)FAM13B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYF5
Splice isoforms : SwissVarQ9NYF5
PhosPhoSitePlusQ9NYF5
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)FAM13B
DMDM Disease mutations51306
Blocks (Seattle)FAM13B
SuperfamilyQ9NYF5
Human Protein AtlasENSG00000031003
Peptide AtlasQ9NYF5
HPRD06464
IPIIPI00009899   IPI00856015   IPI00855804   IPI00967452   IPI00964740   IPI00967758   IPI00964917   IPI00964447   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYF5
IntAct (EBI)Q9NYF5
FunCoupENSG00000031003
BioGRIDFAM13B
STRING (EMBL)FAM13B
ZODIACFAM13B
Ontologies - Pathways
QuickGOQ9NYF5
Ontology : AmiGOGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkFAM13B
Atlas of Cancer Signalling NetworkFAM13B
Wikipedia pathwaysFAM13B
Orthology - Evolution
OrthoDB51306
GeneTree (enSembl)ENSG00000031003
Phylogenetic Trees/Animal Genes : TreeFamFAM13B
HOVERGENQ9NYF5
HOGENOMQ9NYF5
Homologs : HomoloGeneFAM13B
Homology/Alignments : Family Browser (UCSC)FAM13B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM13B
dbVarFAM13B
ClinVarFAM13B
1000_GenomesFAM13B 
Exome Variant ServerFAM13B
ExAC (Exome Aggregation Consortium)FAM13B (select the gene name)
Genetic variants : HAPMAP51306
Genomic Variants (DGV)FAM13B [DGVbeta]
DECIPHERFAM13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM13B 
Mutations
ICGC Data PortalFAM13B 
TCGA Data PortalFAM13B 
Broad Tumor PortalFAM13B
OASIS PortalFAM13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM13B
DgiDB (Drug Gene Interaction Database)FAM13B
DoCM (Curated mutations)FAM13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM13B (select a term)
intoGenFAM13B
Cancer3DFAM13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609371   
Orphanet
MedgenFAM13B
Genetic Testing Registry FAM13B
NextProtQ9NYF5 [Medical]
TSGene51306
GENETestsFAM13B
Target ValidationFAM13B
Huge Navigator FAM13B [HugePedia]
snp3D : Map Gene to Disease51306
BioCentury BCIQFAM13B
ClinGenFAM13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51306
Chemical/Pharm GKB GenePA25916
Clinical trialFAM13B
Miscellaneous
canSAR (ICR)FAM13B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM13B
EVEXFAM13B
GoPubMedFAM13B
iHOPFAM13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.