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FAM13C (family with sequence similarity 13 member C)

Identity

Alias (NCBI)FAM13C1
HGNC (Hugo) FAM13C
HGNC Previous nameFAM13C1
HGNC Previous namefamily with sequence similarity 13, member C1
 family with sequence similarity 13, member C
LocusID (NCBI) 220965
Atlas_Id 54300
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 59246133 and ends at 59362549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM13C (10q21.1) / FAM149B1 (10q22.2)FAM13C (10q21.1) / SUFU (10q24.32)FAM13C (10q21.1) / ZNF365 (10q21.2)
FAM13C 10q21.1 / FAM149B1 10q22.2FAM13C 10q21.1 / ZNF365 10q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM13C   19371
Cards
Entrez_Gene (NCBI)FAM13C    family with sequence similarity 13 member C
AliasesFAM13C1
GeneCards (Weizmann)FAM13C
Ensembl hg19 (Hinxton)ENSG00000148541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148541 [Gene_View]  ENSG00000148541 [Sequence]  chr10:59246133-59362549 [Contig_View]  FAM13C [Vega]
ICGC DataPortalENSG00000148541
TCGA cBioPortalFAM13C
AceView (NCBI)FAM13C
Genatlas (Paris)FAM13C
SOURCE (Princeton)FAM13C
Genetics Home Reference (NIH)FAM13C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM13C  -     chr10:59246133-59362549 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM13C  -     10q21.1   [Description]    (hg19-Feb_2009)
GoldenPathFAM13C - 10q21.1 [CytoView hg19]  FAM13C - 10q21.1 [CytoView hg38]
ImmunoBaseENSG00000148541
Genome Data Viewer NCBIFAM13C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI453702 AK289796 AK294805 AK299924 AK316542
RefSeq transcript (Entrez)NM_001001971 NM_001143773 NM_001166698 NM_001347840 NM_001347842 NM_001347843 NM_001347844 NM_001347845 NM_001347846 NM_001347847 NM_001347848 NM_001347849 NM_001347850 NM_001347851 NM_001347852 NM_198215
Consensus coding sequences : CCDS (NCBI)FAM13C
Gene ExpressionFAM13C [ NCBI-GEO ]   FAM13C [ EBI - ARRAY_EXPRESS ]   FAM13C [ SEEK ]   FAM13C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM13C [ Firebrowse - Broad ]
GenevisibleExpression of FAM13C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220965
GTEX Portal (Tissue expression)FAM13C
Human Protein AtlasENSG00000148541-FAM13C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE31
PhosPhoSitePlusQ8NE31
Domains : Interpro (EBI)FAM13   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM13C
SuperfamilyQ8NE31
AlphaFold pdb e-kbQ8NE31   
Human Protein Atlas [tissue]ENSG00000148541-FAM13C [tissue]
HPRD16875
Protein Interaction databases
DIP (DOE-UCLA)Q8NE31
IntAct (EBI)Q8NE31
BioGRIDFAM13C
STRING (EMBL)FAM13C
ZODIACFAM13C
Ontologies - Pathways
QuickGOQ8NE31
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM13C
Atlas of Cancer Signalling NetworkFAM13C
Wikipedia pathwaysFAM13C
Orthology - Evolution
OrthoDB220965
GeneTree (enSembl)ENSG00000148541
Phylogenetic Trees/Animal Genes : TreeFamFAM13C
Homologs : HomoloGeneFAM13C
Homology/Alignments : Family Browser (UCSC)FAM13C
Gene fusions - Rearrangements
Fusion : MitelmanFAM13C/FAM149B1 [10q21.1/10q22.2]  
Fusion : MitelmanFAM13C/SUFU [10q21.1/10q24.32]  
Fusion : MitelmanFAM13C/ZNF365 [10q21.1/10q21.2]  
Fusion : QuiverFAM13C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM13C
dbVarFAM13C
ClinVarFAM13C
MonarchFAM13C
1000_GenomesFAM13C 
Exome Variant ServerFAM13C
GNOMAD BrowserENSG00000148541
Varsome BrowserFAM13C
ACMGFAM13C variants
VarityQ8NE31
Genomic Variants (DGV)FAM13C [DGVbeta]
DECIPHERFAM13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM13C 
Mutations
ICGC Data PortalFAM13C 
TCGA Data PortalFAM13C 
Broad Tumor PortalFAM13C
OASIS PortalFAM13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM13C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM13C
Mutations and Diseases : HGMDFAM13C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM13C
DgiDB (Drug Gene Interaction Database)FAM13C
DoCM (Curated mutations)FAM13C
CIViC (Clinical Interpretations of Variants in Cancer)FAM13C
Cancer3DFAM13C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM13C
MedgenFAM13C
Genetic Testing Registry FAM13C
NextProtQ8NE31 [Medical]
GENETestsFAM13C
Target ValidationFAM13C
Huge Navigator FAM13C [HugePedia]
ClinGenFAM13C
Clinical trials, drugs, therapy
MyCancerGenomeFAM13C
Protein Interactions : CTDFAM13C
Pharm GKB GenePA164719657
PharosQ8NE31
Clinical trialFAM13C
Miscellaneous
canSAR (ICR)FAM13C
HarmonizomeFAM13C
DataMed IndexFAM13C
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:08:50 CEST 2021

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