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FAM13C (family with sequence similarity 13 member C)

Identity

Alias_namesFAM13C1
family with sequence similarity 13, member C1
family with sequence similarity 13, member C
Other alias
HGNC (Hugo) FAM13C
LocusID (NCBI) 220965
Atlas_Id 54300
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 59246129 and ends at 59362594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM13C (10q21.1) / FAM149B1 (10q22.2)FAM13C (10q21.1) / SUFU (10q24.32)FAM13C (10q21.1) / ZNF365 (10q21.2)
FAM13C 10q21.1 / FAM149B1 10q22.2FAM13C 10q21.1 / ZNF365 10q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM13C   19371
Cards
Entrez_Gene (NCBI)FAM13C  220965  family with sequence similarity 13 member C
AliasesFAM13C1
GeneCards (Weizmann)FAM13C
Ensembl hg19 (Hinxton)ENSG00000148541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148541 [Gene_View]  chr10:59246129-59362594 [Contig_View]  FAM13C [Vega]
ICGC DataPortalENSG00000148541
TCGA cBioPortalFAM13C
AceView (NCBI)FAM13C
Genatlas (Paris)FAM13C
WikiGenes220965
SOURCE (Princeton)FAM13C
Genetics Home Reference (NIH)FAM13C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM13C  -     chr10:59246129-59362594 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM13C  -     10q21.1   [Description]    (hg19-Feb_2009)
EnsemblFAM13C - 10q21.1 [CytoView hg19]  FAM13C - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM13C [Mapview hg19]  FAM13C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI453702 AK289796 AK294805 AK299924 AK316542
RefSeq transcript (Entrez)NM_001001971 NM_001143773 NM_001166698 NM_001347840 NM_001347842 NM_001347843 NM_001347844 NM_001347845 NM_001347846 NM_001347847 NM_001347848 NM_001347849 NM_001347850 NM_001347851 NM_001347852 NM_198215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM13C
Cluster EST : UnigeneHs.607594 [ NCBI ]
CGAP (NCI)Hs.607594
Alternative Splicing GalleryENSG00000148541
Gene ExpressionFAM13C [ NCBI-GEO ]   FAM13C [ EBI - ARRAY_EXPRESS ]   FAM13C [ SEEK ]   FAM13C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM13C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220965
GTEX Portal (Tissue expression)FAM13C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE31
Splice isoforms : SwissVarQ8NE31
PhosPhoSitePlusQ8NE31
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM13C
DMDM Disease mutations220965
Blocks (Seattle)FAM13C
SuperfamilyQ8NE31
Human Protein AtlasENSG00000148541
Peptide AtlasQ8NE31
HPRD16875
IPIIPI00513700   IPI00939344   IPI00968187   IPI00964918   IPI01009915   IPI00966728   IPI00647548   IPI00967385   IPI00965811   IPI01018864   IPI00964632   IPI01012777   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE31
IntAct (EBI)Q8NE31
FunCoupENSG00000148541
BioGRIDFAM13C
STRING (EMBL)FAM13C
ZODIACFAM13C
Ontologies - Pathways
QuickGOQ8NE31
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM13C
Atlas of Cancer Signalling NetworkFAM13C
Wikipedia pathwaysFAM13C
Orthology - Evolution
OrthoDB220965
GeneTree (enSembl)ENSG00000148541
Phylogenetic Trees/Animal Genes : TreeFamFAM13C
HOVERGENQ8NE31
HOGENOMQ8NE31
Homologs : HomoloGeneFAM13C
Homology/Alignments : Family Browser (UCSC)FAM13C
Gene fusions - Rearrangements
Fusion : MitelmanFAM13C/FAM149B1 [10q21.1/10q22.2]  
Fusion : MitelmanFAM13C/SUFU [10q21.1/10q24.32]  [t(10;10)(q21;q24)]  
Fusion : MitelmanFAM13C/ZNF365 [10q21.1/10q21.2]  [t(10;10)(q21;q21)]  
Fusion: TCGAFAM13C 10q21.1 FAM149B1 10q22.2 GBM
Fusion: TCGAFAM13C 10q21.1 ZNF365 10q21.2 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM13C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM13C
dbVarFAM13C
ClinVarFAM13C
1000_GenomesFAM13C 
Exome Variant ServerFAM13C
ExAC (Exome Aggregation Consortium)FAM13C (select the gene name)
Genetic variants : HAPMAP220965
Genomic Variants (DGV)FAM13C [DGVbeta]
DECIPHERFAM13C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM13C 
Mutations
ICGC Data PortalFAM13C 
TCGA Data PortalFAM13C 
Broad Tumor PortalFAM13C
OASIS PortalFAM13C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM13C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM13C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM13C
DgiDB (Drug Gene Interaction Database)FAM13C
DoCM (Curated mutations)FAM13C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM13C (select a term)
intoGenFAM13C
Cancer3DFAM13C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM13C
Genetic Testing Registry FAM13C
NextProtQ8NE31 [Medical]
TSGene220965
GENETestsFAM13C
Target ValidationFAM13C
Huge Navigator FAM13C [HugePedia]
snp3D : Map Gene to Disease220965
BioCentury BCIQFAM13C
ClinGenFAM13C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220965
Chemical/Pharm GKB GenePA164719657
Clinical trialFAM13C
Miscellaneous
canSAR (ICR)FAM13C (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM13C
EVEXFAM13C
GoPubMedFAM13C
iHOPFAM13C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:01 CEST 2017

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