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FAM149A (family with sequence similarity 149 member A)

Identity

Alias_namesfamily with sequence similarity 149
Alias_symbol (synonym)DKFZP564J102
MST119
MSTP119
Other alias
HGNC (Hugo) FAM149A
LocusID (NCBI) 25854
Atlas_Id 40317
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 187070327 and ends at 187093817 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM149A   24527
Cards
Entrez_Gene (NCBI)FAM149A  25854  family with sequence similarity 149 member A
AliasesMST119; MSTP119
GeneCards (Weizmann)FAM149A
Ensembl hg19 (Hinxton)ENSG00000109794 [Gene_View]  chr4:187070327-187093817 [Contig_View]  FAM149A [Vega]
Ensembl hg38 (Hinxton)ENSG00000109794 [Gene_View]  chr4:187070327-187093817 [Contig_View]  FAM149A [Vega]
ICGC DataPortalENSG00000109794
TCGA cBioPortalFAM149A
AceView (NCBI)FAM149A
Genatlas (Paris)FAM149A
WikiGenes25854
SOURCE (Princeton)FAM149A
Genetics Home Reference (NIH)FAM149A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM149A  -     chr4:187070327-187093817 +  4q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM149A  -     4q35.1   [Description]    (hg38-Dec_2013)
EnsemblFAM149A - 4q35.1 [CytoView hg19]  FAM149A - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBIFAM149A [Mapview hg19]  FAM149A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF173894 AK057166 AK295340 AK297679 AK309233
RefSeq transcript (Entrez)NM_001006655 NM_015398
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)FAM149A
Cluster EST : UnigeneHs.744961 [ NCBI ]
CGAP (NCI)Hs.744961
Alternative Splicing GalleryENSG00000109794
Gene ExpressionFAM149A [ NCBI-GEO ]   FAM149A [ EBI - ARRAY_EXPRESS ]   FAM149A [ SEEK ]   FAM149A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM149A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25854
GTEX Portal (Tissue expression)FAM149A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5PLN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5PLN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5PLN7
Splice isoforms : SwissVarA5PLN7
PhosPhoSitePlusA5PLN7
Domains : Interpro (EBI)DUF3719   
Domain families : Pfam (Sanger)DUF3719 (PF12516)   
Domain families : Pfam (NCBI)pfam12516   
Conserved Domain (NCBI)FAM149A
DMDM Disease mutations25854
Blocks (Seattle)FAM149A
SuperfamilyA5PLN7
Human Protein AtlasENSG00000109794
Peptide AtlasA5PLN7
HPRD16810
IPIIPI00784404   IPI00514627   IPI00885141   IPI00885173   IPI00966390   IPI00968282   IPI00967410   IPI00967997   IPI00967751   IPI00969081   
Protein Interaction databases
DIP (DOE-UCLA)A5PLN7
IntAct (EBI)A5PLN7
FunCoupENSG00000109794
BioGRIDFAM149A
STRING (EMBL)FAM149A
ZODIACFAM149A
Ontologies - Pathways
QuickGOA5PLN7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM149A
Atlas of Cancer Signalling NetworkFAM149A
Wikipedia pathwaysFAM149A
Orthology - Evolution
OrthoDB25854
GeneTree (enSembl)ENSG00000109794
Phylogenetic Trees/Animal Genes : TreeFamFAM149A
HOVERGENA5PLN7
HOGENOMA5PLN7
Homologs : HomoloGeneFAM149A
Homology/Alignments : Family Browser (UCSC)FAM149A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM149A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM149A
dbVarFAM149A
ClinVarFAM149A
1000_GenomesFAM149A 
Exome Variant ServerFAM149A
ExAC (Exome Aggregation Consortium)FAM149A (select the gene name)
Genetic variants : HAPMAP25854
Genomic Variants (DGV)FAM149A [DGVbeta]
DECIPHER (Syndromes)4:187070327-187093817  ENSG00000109794
CONAN: Copy Number AnalysisFAM149A 
Mutations
ICGC Data PortalFAM149A 
TCGA Data PortalFAM149A 
Broad Tumor PortalFAM149A
OASIS PortalFAM149A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM149A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM149A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM149A
DgiDB (Drug Gene Interaction Database)FAM149A
DoCM (Curated mutations)FAM149A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM149A (select a term)
intoGenFAM149A
Cancer3DFAM149A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM149A
Genetic Testing Registry FAM149A
NextProtA5PLN7 [Medical]
TSGene25854
GENETestsFAM149A
Huge Navigator FAM149A [HugePedia]
snp3D : Map Gene to Disease25854
BioCentury BCIQFAM149A
ClinGenFAM149A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25854
Chemical/Pharm GKB GenePA162386366
Clinical trialFAM149A
Miscellaneous
canSAR (ICR)FAM149A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM149A
EVEXFAM149A
GoPubMedFAM149A
iHOPFAM149A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:24 CET 2017

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