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FAM153A (family with sequence similarity 153 member A)

Identity

Alias_namesfamily with sequence similarity 153, member A
Alias_symbol (synonym)NY-REN-7
Other alias
HGNC (Hugo) FAM153A
LocusID (NCBI) 285596
Atlas_Id 63039
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177723364 and ends at 177783425 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTTN (11q13.3) / FAM153A (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM153A   29940
Cards
Entrez_Gene (NCBI)FAM153A  285596  family with sequence similarity 153 member A
AliasesNY-REN-7
GeneCards (Weizmann)FAM153A
Ensembl hg19 (Hinxton)ENSG00000170074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170074 [Gene_View]  chr5:177723364-177783425 [Contig_View]  FAM153A [Vega]
ICGC DataPortalENSG00000170074
TCGA cBioPortalFAM153A
AceView (NCBI)FAM153A
Genatlas (Paris)FAM153A
WikiGenes285596
SOURCE (Princeton)FAM153A
Genetics Home Reference (NIH)FAM153A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM153A  -     chr5:177723364-177783425 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM153A  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblFAM153A - 5q35.3 [CytoView hg19]  FAM153A - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIFAM153A [Mapview hg19]  FAM153A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018295 AF155097 AK289518 BC166656 DA217331
RefSeq transcript (Entrez)NM_173663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM153A
Cluster EST : UnigeneHs.653068 [ NCBI ]
CGAP (NCI)Hs.653068
Alternative Splicing GalleryENSG00000170074
Gene ExpressionFAM153A [ NCBI-GEO ]   FAM153A [ EBI - ARRAY_EXPRESS ]   FAM153A [ SEEK ]   FAM153A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM153A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285596
GTEX Portal (Tissue expression)FAM153A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHL3
Splice isoforms : SwissVarQ9UHL3
PhosPhoSitePlusQ9UHL3
Domains : Interpro (EBI)FAM153   
Domain families : Pfam (Sanger)FAM153 (PF15722)   
Domain families : Pfam (NCBI)pfam15722   
Conserved Domain (NCBI)FAM153A
DMDM Disease mutations285596
Blocks (Seattle)FAM153A
SuperfamilyQ9UHL3
Human Protein AtlasENSG00000170074
Peptide AtlasQ9UHL3
HPRD14870
IPIIPI00965521   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHL3
IntAct (EBI)Q9UHL3
FunCoupENSG00000170074
BioGRIDFAM153A
STRING (EMBL)FAM153A
ZODIACFAM153A
Ontologies - Pathways
QuickGOQ9UHL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM153A
Atlas of Cancer Signalling NetworkFAM153A
Wikipedia pathwaysFAM153A
Orthology - Evolution
OrthoDB285596
GeneTree (enSembl)ENSG00000170074
Phylogenetic Trees/Animal Genes : TreeFamFAM153A
HOVERGENQ9UHL3
HOGENOMQ9UHL3
Homologs : HomoloGeneFAM153A
Homology/Alignments : Family Browser (UCSC)FAM153A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM153A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM153A
dbVarFAM153A
ClinVarFAM153A
1000_GenomesFAM153A 
Exome Variant ServerFAM153A
ExAC (Exome Aggregation Consortium)FAM153A (select the gene name)
Genetic variants : HAPMAP285596
Genomic Variants (DGV)FAM153A [DGVbeta]
DECIPHERFAM153A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM153A 
Mutations
ICGC Data PortalFAM153A 
TCGA Data PortalFAM153A 
Broad Tumor PortalFAM153A
OASIS PortalFAM153A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM153A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM153A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM153A
DgiDB (Drug Gene Interaction Database)FAM153A
DoCM (Curated mutations)FAM153A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM153A (select a term)
intoGenFAM153A
Cancer3DFAM153A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM153A
Genetic Testing Registry FAM153A
NextProtQ9UHL3 [Medical]
TSGene285596
GENETestsFAM153A
Target ValidationFAM153A
Huge Navigator FAM153A [HugePedia]
snp3D : Map Gene to Disease285596
BioCentury BCIQFAM153A
ClinGenFAM153A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285596
Chemical/Pharm GKB GenePA162386535
Clinical trialFAM153A
Miscellaneous
canSAR (ICR)FAM153A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM153A
EVEXFAM153A
GoPubMedFAM153A
iHOPFAM153A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:52 CEST 2017

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