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FAM153B (family with sequence similarity 153, member B)

Identity

Alias_namesfamily with sequence similarity 153, member B
Other alias-
HGNC (Hugo) FAM153B
LocusID (NCBI) 202134
Atlas_Id 63040
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175490712 and ends at 175541801 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM177 (2q14.2) / FAM153B (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM153B   27323
Cards
Entrez_Gene (NCBI)FAM153B  202134  family with sequence similarity 153, member B
Aliases
GeneCards (Weizmann)FAM153B
Ensembl hg19 (Hinxton)ENSG00000182230 [Gene_View]  chr5:175490712-175541801 [Contig_View]  FAM153B [Vega]
Ensembl hg38 (Hinxton)ENSG00000182230 [Gene_View]  chr5:175490712-175541801 [Contig_View]  FAM153B [Vega]
ICGC DataPortalENSG00000182230
TCGA cBioPortalFAM153B
AceView (NCBI)FAM153B
Genatlas (Paris)FAM153B
WikiGenes202134
SOURCE (Princeton)FAM153B
Genetics Home Reference (NIH)FAM153B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM153B  -     chr5:175490712-175541801 +  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM153B  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblFAM153B - 5q35.2 [CytoView hg19]  FAM153B - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIFAM153B [Mapview hg19]  FAM153B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL042735 AW072245 BC028606 CD580216 DA224878
RefSeq transcript (Entrez)NM_001079529 NM_001265615
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FAM153B
Cluster EST : UnigeneHs.368516 [ NCBI ]
CGAP (NCI)Hs.368516
Alternative Splicing GalleryENSG00000182230
Gene ExpressionFAM153B [ NCBI-GEO ]   FAM153B [ EBI - ARRAY_EXPRESS ]   FAM153B [ SEEK ]   FAM153B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM153B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202134
GTEX Portal (Tissue expression)FAM153B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7A2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7A2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7A2
Splice isoforms : SwissVarP0C7A2
PhosPhoSitePlusP0C7A2
Domains : Interpro (EBI)FAM153   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM153B
DMDM Disease mutations202134
Blocks (Seattle)FAM153B
SuperfamilyP0C7A2
Human Protein AtlasENSG00000182230
Peptide AtlasP0C7A2
IPIIPI00374289   IPI00889515   IPI00939420   IPI00981552   
Protein Interaction databases
DIP (DOE-UCLA)P0C7A2
IntAct (EBI)P0C7A2
FunCoupENSG00000182230
BioGRIDFAM153B
STRING (EMBL)FAM153B
ZODIACFAM153B
Ontologies - Pathways
QuickGOP0C7A2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM153B
Atlas of Cancer Signalling NetworkFAM153B
Wikipedia pathwaysFAM153B
Orthology - Evolution
OrthoDB202134
GeneTree (enSembl)ENSG00000182230
Phylogenetic Trees/Animal Genes : TreeFamFAM153B
HOVERGENP0C7A2
HOGENOMP0C7A2
Homologs : HomoloGeneFAM153B
Homology/Alignments : Family Browser (UCSC)FAM153B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM153B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM153B
dbVarFAM153B
ClinVarFAM153B
1000_GenomesFAM153B 
Exome Variant ServerFAM153B
ExAC (Exome Aggregation Consortium)FAM153B (select the gene name)
Genetic variants : HAPMAP202134
Genomic Variants (DGV)FAM153B [DGVbeta]
DECIPHER (Syndromes)5:175490712-175541801  ENSG00000182230
CONAN: Copy Number AnalysisFAM153B 
Mutations
ICGC Data PortalFAM153B 
TCGA Data PortalFAM153B 
Broad Tumor PortalFAM153B
OASIS PortalFAM153B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM153B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM153B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM153B
DgiDB (Drug Gene Interaction Database)FAM153B
DoCM (Curated mutations)FAM153B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM153B (select a term)
intoGenFAM153B
Cancer3DFAM153B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM153B
Genetic Testing Registry FAM153B
NextProtP0C7A2 [Medical]
TSGene202134
GENETestsFAM153B
Huge Navigator FAM153B [HugePedia]
snp3D : Map Gene to Disease202134
BioCentury BCIQFAM153B
ClinGenFAM153B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202134
Chemical/Pharm GKB GenePA162386580
Clinical trialFAM153B
Miscellaneous
canSAR (ICR)FAM153B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM153B
EVEXFAM153B
GoPubMedFAM153B
iHOPFAM153B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:34 CET 2017

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