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FAM153C (family with sequence similarity 153, member C, pseudogene)

Identity

Alias_namesfamily with sequence similarity 153, member C
Alias_symbol (synonym)NY-REN-7-like
Other alias
HGNC (Hugo) FAM153C
LocusID (NCBI) 653316
Atlas_Id 63041
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175488258 and ends at 175543018 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM153C   33936
Cards
Entrez_Gene (NCBI)FAM153C  653316  family with sequence similarity 153, member C, pseudogene
AliasesNY-REN-7-like
GeneCards (Weizmann)FAM153C
Ensembl hg19 (Hinxton)ENSG00000204677 [Gene_View]  chr5:175488258-175543018 [Contig_View]  FAM153C [Vega]
Ensembl hg38 (Hinxton)ENSG00000204677 [Gene_View]  chr5:175488258-175543018 [Contig_View]  FAM153C [Vega]
ICGC DataPortalENSG00000204677
TCGA cBioPortalFAM153C
AceView (NCBI)FAM153C
Genatlas (Paris)FAM153C
WikiGenes653316
SOURCE (Princeton)FAM153C
Genetics Home Reference (NIH)FAM153C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM153C  -     chr5:175488258-175543018 +  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM153C  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblFAM153C - 5q35.2 [CytoView hg19]  FAM153C - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIFAM153C [Mapview hg19]  FAM153C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294762 BC101338 BC101339 BC101340 BC101341
RefSeq transcript (Entrez)NM_001079527
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FAM153C
Cluster EST : UnigeneHs.652193 [ NCBI ]
CGAP (NCI)Hs.652193
Alternative Splicing GalleryENSG00000204677
Gene ExpressionFAM153C [ NCBI-GEO ]   FAM153C [ EBI - ARRAY_EXPRESS ]   FAM153C [ SEEK ]   FAM153C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM153C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653316
GTEX Portal (Tissue expression)FAM153C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ494X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ494X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ494X1
Splice isoforms : SwissVarQ494X1
PhosPhoSitePlusQ494X1
Domains : Interpro (EBI)FAM153   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM153C
DMDM Disease mutations653316
Blocks (Seattle)FAM153C
SuperfamilyQ494X1
Human Protein AtlasENSG00000204677
Peptide AtlasQ494X1
IPIIPI00873925   IPI00647186   IPI00964134   IPI00964995   
Protein Interaction databases
DIP (DOE-UCLA)Q494X1
IntAct (EBI)Q494X1
FunCoupENSG00000204677
BioGRIDFAM153C
STRING (EMBL)FAM153C
ZODIACFAM153C
Ontologies - Pathways
QuickGOQ494X1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM153C
Atlas of Cancer Signalling NetworkFAM153C
Wikipedia pathwaysFAM153C
Orthology - Evolution
OrthoDB653316
GeneTree (enSembl)ENSG00000204677
Phylogenetic Trees/Animal Genes : TreeFamFAM153C
HOVERGENQ494X1
HOGENOMQ494X1
Homologs : HomoloGeneFAM153C
Homology/Alignments : Family Browser (UCSC)FAM153C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM153C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM153C
dbVarFAM153C
ClinVarFAM153C
1000_GenomesFAM153C 
Exome Variant ServerFAM153C
ExAC (Exome Aggregation Consortium)FAM153C (select the gene name)
Genetic variants : HAPMAP653316
Genomic Variants (DGV)FAM153C [DGVbeta]
DECIPHER (Syndromes)5:175488258-175543018  ENSG00000204677
CONAN: Copy Number AnalysisFAM153C 
Mutations
ICGC Data PortalFAM153C 
TCGA Data PortalFAM153C 
Broad Tumor PortalFAM153C
OASIS PortalFAM153C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM153C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM153C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM153C
DgiDB (Drug Gene Interaction Database)FAM153C
DoCM (Curated mutations)FAM153C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM153C (select a term)
intoGenFAM153C
Cancer3DFAM153C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM153C
Genetic Testing Registry FAM153C
NextProtQ494X1 [Medical]
TSGene653316
GENETestsFAM153C
Huge Navigator FAM153C [HugePedia]
snp3D : Map Gene to Disease653316
BioCentury BCIQFAM153C
ClinGenFAM153C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653316
Chemical/Pharm GKB GenePA162386629
Clinical trialFAM153C
Miscellaneous
canSAR (ICR)FAM153C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM153C
EVEXFAM153C
GoPubMedFAM153C
iHOPFAM153C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:34 CET 2017

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