Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM157A (family with sequence similarity 157 member A (non-protein coding))

Identity

Alias_namesfamily with sequence similarity 157, member A
Other aliasGTF2IP18
HGNC (Hugo) FAM157A
LocusID (NCBI) 728262
Atlas_Id 63048
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 198152366 and ends at 198180857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM157A (3q29) / C9 (5p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM157A   34079
Cards
Entrez_Gene (NCBI)FAM157A  728262  family with sequence similarity 157 member A (non-protein coding)
AliasesGTF2IP18
GeneCards (Weizmann)FAM157A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:198152366-198180857 [Contig_View]  FAM157A [Vega]
TCGA cBioPortalFAM157A
AceView (NCBI)FAM157A
Genatlas (Paris)FAM157A
WikiGenes728262
SOURCE (Princeton)FAM157A
Genetics Home Reference (NIH)FAM157A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM157A  -     chr3:198152366-198180857 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM157A  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblFAM157A - 3q29 [CytoView hg19]  FAM157A - 3q29 [CytoView hg38]
Mapping of homologs : NCBIFAM157A [Mapview hg19]  FAM157A [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145248
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_187539
Consensus coding sequences : CCDS (NCBI)FAM157A
Cluster EST : UnigeneHs.744675 [ NCBI ]
CGAP (NCI)Hs.744675
Gene ExpressionFAM157A [ NCBI-GEO ]   FAM157A [ EBI - ARRAY_EXPRESS ]   FAM157A [ SEEK ]   FAM157A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM157A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728262
GTEX Portal (Tissue expression)FAM157A
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JC47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JC47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JC47
Splice isoforms : SwissVarC9JC47
PhosPhoSitePlusC9JC47
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM157A
DMDM Disease mutations728262
Blocks (Seattle)FAM157A
SuperfamilyC9JC47
Peptide AtlasC9JC47
IPIIPI00922249   
Protein Interaction databases
DIP (DOE-UCLA)C9JC47
IntAct (EBI)C9JC47
BioGRIDFAM157A
STRING (EMBL)FAM157A
ZODIACFAM157A
Ontologies - Pathways
QuickGOC9JC47
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM157A
Atlas of Cancer Signalling NetworkFAM157A
Wikipedia pathwaysFAM157A
Orthology - Evolution
OrthoDB728262
Phylogenetic Trees/Animal Genes : TreeFamFAM157A
HOVERGENC9JC47
HOGENOMC9JC47
Homologs : HomoloGeneFAM157A
Homology/Alignments : Family Browser (UCSC)FAM157A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM157A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM157A
dbVarFAM157A
ClinVarFAM157A
1000_GenomesFAM157A 
Exome Variant ServerFAM157A
ExAC (Exome Aggregation Consortium)FAM157A (select the gene name)
Genetic variants : HAPMAP728262
Genomic Variants (DGV)FAM157A [DGVbeta]
DECIPHERFAM157A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM157A 
Mutations
ICGC Data PortalFAM157A 
TCGA Data PortalFAM157A 
Broad Tumor PortalFAM157A
OASIS PortalFAM157A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM157A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM157A
BioMutasearch FAM157A
DgiDB (Drug Gene Interaction Database)FAM157A
DoCM (Curated mutations)FAM157A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM157A (select a term)
intoGenFAM157A
Cancer3DFAM157A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM157A
Genetic Testing Registry FAM157A
NextProtC9JC47 [Medical]
TSGene728262
GENETestsFAM157A
Target ValidationFAM157A
Huge Navigator FAM157A [HugePedia]
snp3D : Map Gene to Disease728262
BioCentury BCIQFAM157A
ClinGenFAM157A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728262
Chemical/Pharm GKB GenePA164719690
Clinical trialFAM157A
Miscellaneous
canSAR (ICR)FAM157A (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM157A
EVEXFAM157A
GoPubMedFAM157A
iHOPFAM157A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:47:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.