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FAM157B (family with sequence similarity 157 member B (non-protein coding))

Identity

Alias_namesfamily with sequence similarity 157, member B
Other alias-
HGNC (Hugo) FAM157B
LocusID (NCBI) 100132403
Atlas_Id 63049
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 138216187 and ends at 138243722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM157B (9q34.3) / OGG1 (3p25.3)PSMD13 (11p15.5) / FAM157B (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM157B   34080
Cards
Entrez_Gene (NCBI)FAM157B  100132403  family with sequence similarity 157 member B (non-protein coding)
Aliases
GeneCards (Weizmann)FAM157B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:138216187-138243722 [Contig_View]  FAM157B [Vega]
TCGA cBioPortalFAM157B
AceView (NCBI)FAM157B
Genatlas (Paris)FAM157B
WikiGenes100132403
SOURCE (Princeton)FAM157B
Genetics Home Reference (NIH)FAM157B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM157B  -     chr9:138216187-138243722 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM157B  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblFAM157B - 9q34.3 [CytoView hg19]  FAM157B - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIFAM157B [Mapview hg19]  FAM157B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM157B
Cluster EST : UnigeneHs.741123 [ NCBI ]
CGAP (NCI)Hs.741123
Gene ExpressionFAM157B [ NCBI-GEO ]   FAM157B [ EBI - ARRAY_EXPRESS ]   FAM157B [ SEEK ]   FAM157B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM157B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132403
GTEX Portal (Tissue expression)FAM157B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG42
Splice isoforms : SwissVarP0CG42
PhosPhoSitePlusP0CG42
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM157B
DMDM Disease mutations100132403
Blocks (Seattle)FAM157B
SuperfamilyP0CG42
Peptide AtlasP0CG42
IPIIPI00922464   
Protein Interaction databases
DIP (DOE-UCLA)P0CG42
IntAct (EBI)P0CG42
BioGRIDFAM157B
STRING (EMBL)FAM157B
ZODIACFAM157B
Ontologies - Pathways
QuickGOP0CG42
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM157B
Atlas of Cancer Signalling NetworkFAM157B
Wikipedia pathwaysFAM157B
Orthology - Evolution
OrthoDB100132403
Phylogenetic Trees/Animal Genes : TreeFamFAM157B
HOVERGENP0CG42
HOGENOMP0CG42
Homologs : HomoloGeneFAM157B
Homology/Alignments : Family Browser (UCSC)FAM157B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM157B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM157B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM157B
dbVarFAM157B
ClinVarFAM157B
1000_GenomesFAM157B 
Exome Variant ServerFAM157B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100132403
Genomic Variants (DGV)FAM157B [DGVbeta]
DECIPHERFAM157B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM157B 
Mutations
ICGC Data PortalFAM157B 
TCGA Data PortalFAM157B 
Broad Tumor PortalFAM157B
OASIS PortalFAM157B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM157B
BioMutasearch FAM157B
DgiDB (Drug Gene Interaction Database)FAM157B
DoCM (Curated mutations)FAM157B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM157B (select a term)
intoGenFAM157B
Cancer3DFAM157B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM157B
MedgenFAM157B
Genetic Testing Registry FAM157B
NextProtP0CG42 [Medical]
TSGene100132403
GENETestsFAM157B
Target ValidationFAM157B
Huge Navigator FAM157B [HugePedia]
snp3D : Map Gene to Disease100132403
BioCentury BCIQFAM157B
ClinGenFAM157B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132403
Chemical/Pharm GKB GenePA164719708
Clinical trialFAM157B
Miscellaneous
canSAR (ICR)FAM157B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM157B
EVEXFAM157B
GoPubMedFAM157B
iHOPFAM157B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:41 CET 2017

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