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FAM159A (family with sequence similarity 159 member A)

Identity

Alias_namesfamily with sequence similarity 159, member A
Alias_symbol (synonym)MGC52498
Other aliasPRO7171
WWLS2783
HGNC (Hugo) FAM159A
LocusID (NCBI) 348378
Atlas_Id 63051
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52633344 and ends at 52657065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FNIP2 (4q32.1) / FAM159A (1p32.3)LRRC41 (1p34.1) / FAM159A (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM159A   28757
Cards
Entrez_Gene (NCBI)FAM159A  348378  family with sequence similarity 159 member A
AliasesPRO7171; WWLS2783
GeneCards (Weizmann)FAM159A
Ensembl hg19 (Hinxton)ENSG00000182183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182183 [Gene_View]  chr1:52633344-52657065 [Contig_View]  FAM159A [Vega]
ICGC DataPortalENSG00000182183
TCGA cBioPortalFAM159A
AceView (NCBI)FAM159A
Genatlas (Paris)FAM159A
WikiGenes348378
SOURCE (Princeton)FAM159A
Genetics Home Reference (NIH)FAM159A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM159A  -     chr1:52633344-52657065 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM159A  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblFAM159A - 1p32.3 [CytoView hg19]  FAM159A - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIFAM159A [Mapview hg19]  FAM159A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ573663 AK128236 AY358621 BC041608 BG192125
RefSeq transcript (Entrez)NM_001042693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM159A
Cluster EST : UnigeneHs.424589 [ NCBI ]
CGAP (NCI)Hs.424589
Alternative Splicing GalleryENSG00000182183
Gene ExpressionFAM159A [ NCBI-GEO ]   FAM159A [ EBI - ARRAY_EXPRESS ]   FAM159A [ SEEK ]   FAM159A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM159A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348378
GTEX Portal (Tissue expression)FAM159A
Human Protein AtlasENSG00000182183-FAM159A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWV7
Splice isoforms : SwissVarQ6UWV7
PhosPhoSitePlusQ6UWV7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM159A
DMDM Disease mutations348378
Blocks (Seattle)FAM159A
SuperfamilyQ6UWV7
Human Protein Atlas [tissue]ENSG00000182183-FAM159A [tissue]
Peptide AtlasQ6UWV7
HPRD14678
IPIIPI00743798   IPI00884943   IPI00984659   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWV7
IntAct (EBI)Q6UWV7
FunCoupENSG00000182183
BioGRIDFAM159A
STRING (EMBL)FAM159A
ZODIACFAM159A
Ontologies - Pathways
QuickGOQ6UWV7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM159A
Atlas of Cancer Signalling NetworkFAM159A
Wikipedia pathwaysFAM159A
Orthology - Evolution
OrthoDB348378
GeneTree (enSembl)ENSG00000182183
Phylogenetic Trees/Animal Genes : TreeFamFAM159A
HOVERGENQ6UWV7
HOGENOMQ6UWV7
Homologs : HomoloGeneFAM159A
Homology/Alignments : Family Browser (UCSC)FAM159A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM159A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM159A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM159A
dbVarFAM159A
ClinVarFAM159A
1000_GenomesFAM159A 
Exome Variant ServerFAM159A
ExAC (Exome Aggregation Consortium)ENSG00000182183
GNOMAD BrowserENSG00000182183
Genetic variants : HAPMAP348378
Genomic Variants (DGV)FAM159A [DGVbeta]
DECIPHERFAM159A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM159A 
Mutations
ICGC Data PortalFAM159A 
TCGA Data PortalFAM159A 
Broad Tumor PortalFAM159A
OASIS PortalFAM159A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM159A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM159A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM159A
DgiDB (Drug Gene Interaction Database)FAM159A
DoCM (Curated mutations)FAM159A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM159A (select a term)
intoGenFAM159A
Cancer3DFAM159A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM159A
MedgenFAM159A
Genetic Testing Registry FAM159A
NextProtQ6UWV7 [Medical]
TSGene348378
GENETestsFAM159A
Target ValidationFAM159A
Huge Navigator FAM159A [HugePedia]
snp3D : Map Gene to Disease348378
BioCentury BCIQFAM159A
ClinGenFAM159A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348378
Chemical/Pharm GKB GenePA162386717
Clinical trialFAM159A
Miscellaneous
canSAR (ICR)FAM159A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM159A
EVEXFAM159A
GoPubMedFAM159A
iHOPFAM159A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:45:18 CET 2017

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