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FAM159B (family with sequence similarity 159 member B)

Identity

Alias_namesfamily with sequence similarity 159, member B
Other alias-
HGNC (Hugo) FAM159B
LocusID (NCBI) 100132916
Atlas_Id 63052
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64690308 and ends at 64718190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM159B   34236
Cards
Entrez_Gene (NCBI)FAM159B  100132916  family with sequence similarity 159 member B
Aliases
GeneCards (Weizmann)FAM159B
Ensembl hg19 (Hinxton)ENSG00000145642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145642 [Gene_View]  chr5:64690308-64718190 [Contig_View]  FAM159B [Vega]
ICGC DataPortalENSG00000145642
TCGA cBioPortalFAM159B
AceView (NCBI)FAM159B
Genatlas (Paris)FAM159B
WikiGenes100132916
SOURCE (Princeton)FAM159B
Genetics Home Reference (NIH)FAM159B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM159B  -     chr5:64690308-64718190 +  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM159B  -     5q12.3   [Description]    (hg19-Feb_2009)
EnsemblFAM159B - 5q12.3 [CytoView hg19]  FAM159B - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBIFAM159B [Mapview hg19]  FAM159B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ271827 BU785751 BU952508
RefSeq transcript (Entrez)NM_001164442
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM159B
Cluster EST : UnigeneHs.591776 [ NCBI ]
CGAP (NCI)Hs.591776
Alternative Splicing GalleryENSG00000145642
Gene ExpressionFAM159B [ NCBI-GEO ]   FAM159B [ EBI - ARRAY_EXPRESS ]   FAM159B [ SEEK ]   FAM159B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM159B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132916
GTEX Portal (Tissue expression)FAM159B
Human Protein AtlasENSG00000145642-FAM159B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKW6
Splice isoforms : SwissVarA6NKW6
PhosPhoSitePlusA6NKW6
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)FAM159B
DMDM Disease mutations100132916
Blocks (Seattle)FAM159B
SuperfamilyA6NKW6
Human Protein Atlas [tissue]ENSG00000145642-FAM159B [tissue]
Peptide AtlasA6NKW6
IPIIPI00737348   IPI00963873   
Protein Interaction databases
DIP (DOE-UCLA)A6NKW6
IntAct (EBI)A6NKW6
FunCoupENSG00000145642
BioGRIDFAM159B
STRING (EMBL)FAM159B
ZODIACFAM159B
Ontologies - Pathways
QuickGOA6NKW6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM159B
Atlas of Cancer Signalling NetworkFAM159B
Wikipedia pathwaysFAM159B
Orthology - Evolution
OrthoDB100132916
GeneTree (enSembl)ENSG00000145642
Phylogenetic Trees/Animal Genes : TreeFamFAM159B
HOVERGENA6NKW6
HOGENOMA6NKW6
Homologs : HomoloGeneFAM159B
Homology/Alignments : Family Browser (UCSC)FAM159B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM159B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM159B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM159B
dbVarFAM159B
ClinVarFAM159B
1000_GenomesFAM159B 
Exome Variant ServerFAM159B
ExAC (Exome Aggregation Consortium)ENSG00000145642
GNOMAD BrowserENSG00000145642
Genetic variants : HAPMAP100132916
Genomic Variants (DGV)FAM159B [DGVbeta]
DECIPHERFAM159B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM159B 
Mutations
ICGC Data PortalFAM159B 
TCGA Data PortalFAM159B 
Broad Tumor PortalFAM159B
OASIS PortalFAM159B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM159B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM159B
DgiDB (Drug Gene Interaction Database)FAM159B
DoCM (Curated mutations)FAM159B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM159B (select a term)
intoGenFAM159B
Cancer3DFAM159B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM159B
MedgenFAM159B
Genetic Testing Registry FAM159B
NextProtA6NKW6 [Medical]
TSGene100132916
GENETestsFAM159B
Target ValidationFAM159B
Huge Navigator FAM159B [HugePedia]
snp3D : Map Gene to Disease100132916
BioCentury BCIQFAM159B
ClinGenFAM159B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132916
Chemical/Pharm GKB GenePA162386728
Clinical trialFAM159B
Miscellaneous
canSAR (ICR)FAM159B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM159B
EVEXFAM159B
GoPubMedFAM159B
iHOPFAM159B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:28:30 CET 2017

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