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FAM160A2 (family with sequence similarity 160, member A2)

Identity

Alias_namesC11orf56
chromosome 11 open reading frame 56
family with sequence similarity 160, member A2
Alias_symbol (synonym)FLJ22665
KIAA1759
DKFZP566M1046
FHIP
Other alias
HGNC (Hugo) FAM160A2
LocusID (NCBI) 84067
Atlas_Id 63054
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6232564 and ends at 6255941 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DDX39A (19p13.12) / FAM160A2 (11p15.4)FAM160A2 (11p15.4) / APBB1 (11p15.4)FAM160A2 (11p15.4) / KRT5 (12q13.13)
MYH9 (22q12.3) / FAM160A2 (11p15.4)ZNF195 (11p15.4) / FAM160A2 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM160A2   25378
Cards
Entrez_Gene (NCBI)FAM160A2  84067  family with sequence similarity 160, member A2
AliasesC11orf56
GeneCards (Weizmann)FAM160A2
Ensembl hg19 (Hinxton)ENSG00000051009 [Gene_View]  chr11:6232564-6255941 [Contig_View]  FAM160A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000051009 [Gene_View]  chr11:6232564-6255941 [Contig_View]  FAM160A2 [Vega]
ICGC DataPortalENSG00000051009
TCGA cBioPortalFAM160A2
AceView (NCBI)FAM160A2
Genatlas (Paris)FAM160A2
WikiGenes84067
SOURCE (Princeton)FAM160A2
Genetics Home Reference (NIH)FAM160A2
Genomic and cartography
GoldenPath hg19 (UCSC)FAM160A2  -     chr11:6232564-6255941 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM160A2  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblFAM160A2 - 11p15.4 [CytoView hg19]  FAM160A2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIFAM160A2 [Mapview hg19]  FAM160A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051546 AK056468 AK291702 AL136723 AM392790
RefSeq transcript (Entrez)NM_001098794 NM_032127
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)FAM160A2
Cluster EST : UnigeneHs.501793 [ NCBI ]
CGAP (NCI)Hs.501793
Alternative Splicing GalleryENSG00000051009
Gene ExpressionFAM160A2 [ NCBI-GEO ]   FAM160A2 [ EBI - ARRAY_EXPRESS ]   FAM160A2 [ SEEK ]   FAM160A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM160A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84067
GTEX Portal (Tissue expression)FAM160A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N612   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N612  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N612
Splice isoforms : SwissVarQ8N612
PhosPhoSitePlusQ8N612
Domains : Interpro (EBI)RetinoicA-induced_16-like   
Domain families : Pfam (Sanger)RAI16-like (PF10257)   
Domain families : Pfam (NCBI)pfam10257   
Conserved Domain (NCBI)FAM160A2
DMDM Disease mutations84067
Blocks (Seattle)FAM160A2
SuperfamilyQ8N612
Human Protein AtlasENSG00000051009
Peptide AtlasQ8N612
HPRD08002
IPIIPI00798104   IPI00149375   IPI00789519   IPI00877083   
Protein Interaction databases
DIP (DOE-UCLA)Q8N612
IntAct (EBI)Q8N612
FunCoupENSG00000051009
BioGRIDFAM160A2
STRING (EMBL)FAM160A2
ZODIACFAM160A2
Ontologies - Pathways
QuickGOQ8N612
Ontology : AmiGOprotein binding  endosome organization  lysosome organization  endosome to lysosome transport  protein transport  early endosome to late endosome transport  FHF complex  
Ontology : EGO-EBIprotein binding  endosome organization  lysosome organization  endosome to lysosome transport  protein transport  early endosome to late endosome transport  FHF complex  
NDEx NetworkFAM160A2
Atlas of Cancer Signalling NetworkFAM160A2
Wikipedia pathwaysFAM160A2
Orthology - Evolution
OrthoDB84067
GeneTree (enSembl)ENSG00000051009
Phylogenetic Trees/Animal Genes : TreeFamFAM160A2
HOVERGENQ8N612
HOGENOMQ8N612
Homologs : HomoloGeneFAM160A2
Homology/Alignments : Family Browser (UCSC)FAM160A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM160A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM160A2
dbVarFAM160A2
ClinVarFAM160A2
1000_GenomesFAM160A2 
Exome Variant ServerFAM160A2
ExAC (Exome Aggregation Consortium)FAM160A2 (select the gene name)
Genetic variants : HAPMAP84067
Genomic Variants (DGV)FAM160A2 [DGVbeta]
DECIPHER (Syndromes)11:6232564-6255941  ENSG00000051009
CONAN: Copy Number AnalysisFAM160A2 
Mutations
ICGC Data PortalFAM160A2 
TCGA Data PortalFAM160A2 
Broad Tumor PortalFAM160A2
OASIS PortalFAM160A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM160A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM160A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM160A2
DgiDB (Drug Gene Interaction Database)FAM160A2
DoCM (Curated mutations)FAM160A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM160A2 (select a term)
intoGenFAM160A2
Cancer3DFAM160A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM160A2
Genetic Testing Registry FAM160A2
NextProtQ8N612 [Medical]
TSGene84067
GENETestsFAM160A2
Huge Navigator FAM160A2 [HugePedia]
snp3D : Map Gene to Disease84067
BioCentury BCIQFAM160A2
ClinGenFAM160A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84067
Chemical/Pharm GKB GenePA162386769
Clinical trialFAM160A2
Miscellaneous
canSAR (ICR)FAM160A2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM160A2
EVEXFAM160A2
GoPubMedFAM160A2
iHOPFAM160A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:36 CET 2017

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