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FAM160B1 (family with sequence similarity 160 member B1)

Identity

Alias_namesKIAA1600
KIAA1600
family with sequence similarity 160, member B1
Alias_symbol (synonym)bA106M7.3
Other alias
HGNC (Hugo) FAM160B1
LocusID (NCBI) 57700
Atlas_Id 63055
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114821744 and ends at 114899827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM160B1 (10q25.3) / FAM160B1 (10q25.3)FAM160B1 (10q25.3) / VTI1A (10q25.2)NF1 (17q11.2) / FAM160B1 (10q25.3)
NT5DC1 (6q22.1) / FAM160B1 (10q25.3)TIMMDC1 (3q13.33) / FAM160B1 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM160B1   29320
Cards
Entrez_Gene (NCBI)FAM160B1  57700  family with sequence similarity 160 member B1
AliasesKIAA1600; bA106M7.3
GeneCards (Weizmann)FAM160B1
Ensembl hg19 (Hinxton)ENSG00000151553 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151553 [Gene_View]  chr10:114821744-114899827 [Contig_View]  FAM160B1 [Vega]
ICGC DataPortalENSG00000151553
TCGA cBioPortalFAM160B1
AceView (NCBI)FAM160B1
Genatlas (Paris)FAM160B1
WikiGenes57700
SOURCE (Princeton)FAM160B1
Genetics Home Reference (NIH)FAM160B1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM160B1  -     chr10:114821744-114899827 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM160B1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblFAM160B1 - 10q25.3 [CytoView hg19]  FAM160B1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIFAM160B1 [Mapview hg19]  FAM160B1 [Mapview hg38]
OMIM617312   
Gene and transcription
Genbank (Entrez)AB046820 AI521900 AL833226 BC037207 CR933692
RefSeq transcript (Entrez)NM_001135051 NM_020940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM160B1
Cluster EST : UnigeneHs.192619 [ NCBI ]
CGAP (NCI)Hs.192619
Alternative Splicing GalleryENSG00000151553
Gene ExpressionFAM160B1 [ NCBI-GEO ]   FAM160B1 [ EBI - ARRAY_EXPRESS ]   FAM160B1 [ SEEK ]   FAM160B1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM160B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57700
GTEX Portal (Tissue expression)FAM160B1
Human Protein AtlasENSG00000151553-FAM160B1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0V3
Splice isoforms : SwissVarQ5W0V3
PhosPhoSitePlusQ5W0V3
Domains : Interpro (EBI)RetinoicA-induced_16-like   
Domain families : Pfam (Sanger)RAI16-like (PF10257)   
Domain families : Pfam (NCBI)pfam10257   
Conserved Domain (NCBI)FAM160B1
DMDM Disease mutations57700
Blocks (Seattle)FAM160B1
SuperfamilyQ5W0V3
Human Protein Atlas [tissue]ENSG00000151553-FAM160B1 [tissue]
Peptide AtlasQ5W0V3
HPRD17219
IPIIPI00289031   IPI00639970   IPI00985436   IPI00647056   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0V3
IntAct (EBI)Q5W0V3
FunCoupENSG00000151553
BioGRIDFAM160B1
STRING (EMBL)FAM160B1
ZODIACFAM160B1
Ontologies - Pathways
QuickGOQ5W0V3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM160B1
Atlas of Cancer Signalling NetworkFAM160B1
Wikipedia pathwaysFAM160B1
Orthology - Evolution
OrthoDB57700
GeneTree (enSembl)ENSG00000151553
Phylogenetic Trees/Animal Genes : TreeFamFAM160B1
HOVERGENQ5W0V3
HOGENOMQ5W0V3
Homologs : HomoloGeneFAM160B1
Homology/Alignments : Family Browser (UCSC)FAM160B1
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM160B1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM160B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM160B1
dbVarFAM160B1
ClinVarFAM160B1
1000_GenomesFAM160B1 
Exome Variant ServerFAM160B1
ExAC (Exome Aggregation Consortium)ENSG00000151553
GNOMAD BrowserENSG00000151553
Genetic variants : HAPMAP57700
Genomic Variants (DGV)FAM160B1 [DGVbeta]
DECIPHERFAM160B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM160B1 
Mutations
ICGC Data PortalFAM160B1 
TCGA Data PortalFAM160B1 
Broad Tumor PortalFAM160B1
OASIS PortalFAM160B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM160B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM160B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM160B1
DgiDB (Drug Gene Interaction Database)FAM160B1
DoCM (Curated mutations)FAM160B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM160B1 (select a term)
intoGenFAM160B1
Cancer3DFAM160B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617312   
Orphanet
MedgenFAM160B1
Genetic Testing Registry FAM160B1
NextProtQ5W0V3 [Medical]
TSGene57700
GENETestsFAM160B1
Target ValidationFAM160B1
Huge Navigator FAM160B1 [HugePedia]
snp3D : Map Gene to Disease57700
BioCentury BCIQFAM160B1
ClinGenFAM160B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57700
Chemical/Pharm GKB GenePA162386798
Clinical trialFAM160B1
Miscellaneous
canSAR (ICR)FAM160B1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM160B1
EVEXFAM160B1
GoPubMedFAM160B1
iHOPFAM160B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:34 CET 2017

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