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FAM160B2 (family with sequence similarity 160 member B2)

Identity

Alias_namesRAI16
retinoic acid induced 16
family with sequence similarity 160, member B2
Alias_symbol (synonym)FLJ21801
Other alias
HGNC (Hugo) FAM160B2
LocusID (NCBI) 64760
Atlas_Id 53227
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22089203 and ends at 22104380 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM160B2 (8p21.3) / TUSC3 (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM160B2   16492
Cards
Entrez_Gene (NCBI)FAM160B2  64760  family with sequence similarity 160 member B2
AliasesRAI16
GeneCards (Weizmann)FAM160B2
Ensembl hg19 (Hinxton)ENSG00000158863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158863 [Gene_View]  chr8:22089203-22104380 [Contig_View]  FAM160B2 [Vega]
ICGC DataPortalENSG00000158863
TCGA cBioPortalFAM160B2
AceView (NCBI)FAM160B2
Genatlas (Paris)FAM160B2
WikiGenes64760
SOURCE (Princeton)FAM160B2
Genetics Home Reference (NIH)FAM160B2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM160B2  -     chr8:22089203-22104380 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM160B2  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblFAM160B2 - 8p21.3 [CytoView hg19]  FAM160B2 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIFAM160B2 [Mapview hg19]  FAM160B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF318332 AF495722 AK001987 AK025411 AK025454
RefSeq transcript (Entrez)NM_022749
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM160B2
Cluster EST : UnigeneHs.491223 [ NCBI ]
CGAP (NCI)Hs.491223
Alternative Splicing GalleryENSG00000158863
Gene ExpressionFAM160B2 [ NCBI-GEO ]   FAM160B2 [ EBI - ARRAY_EXPRESS ]   FAM160B2 [ SEEK ]   FAM160B2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM160B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64760
GTEX Portal (Tissue expression)FAM160B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V87
Splice isoforms : SwissVarQ86V87
PhosPhoSitePlusQ86V87
Domains : Interpro (EBI)RetinoicA-induced_16-like   
Domain families : Pfam (Sanger)RAI16-like (PF10257)   
Domain families : Pfam (NCBI)pfam10257   
Conserved Domain (NCBI)FAM160B2
DMDM Disease mutations64760
Blocks (Seattle)FAM160B2
SuperfamilyQ86V87
Human Protein AtlasENSG00000158863
Peptide AtlasQ86V87
HPRD17951
IPIIPI00654780   IPI00941746   IPI00103856   IPI00976620   IPI00790841   
Protein Interaction databases
DIP (DOE-UCLA)Q86V87
IntAct (EBI)Q86V87
FunCoupENSG00000158863
BioGRIDFAM160B2
STRING (EMBL)FAM160B2
ZODIACFAM160B2
Ontologies - Pathways
QuickGOQ86V87
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM160B2
Atlas of Cancer Signalling NetworkFAM160B2
Wikipedia pathwaysFAM160B2
Orthology - Evolution
OrthoDB64760
GeneTree (enSembl)ENSG00000158863
Phylogenetic Trees/Animal Genes : TreeFamFAM160B2
HOVERGENQ86V87
HOGENOMQ86V87
Homologs : HomoloGeneFAM160B2
Homology/Alignments : Family Browser (UCSC)FAM160B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM160B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM160B2
dbVarFAM160B2
ClinVarFAM160B2
1000_GenomesFAM160B2 
Exome Variant ServerFAM160B2
ExAC (Exome Aggregation Consortium)FAM160B2 (select the gene name)
Genetic variants : HAPMAP64760
Genomic Variants (DGV)FAM160B2 [DGVbeta]
DECIPHERFAM160B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM160B2 
Mutations
ICGC Data PortalFAM160B2 
TCGA Data PortalFAM160B2 
Broad Tumor PortalFAM160B2
OASIS PortalFAM160B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM160B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM160B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM160B2
DgiDB (Drug Gene Interaction Database)FAM160B2
DoCM (Curated mutations)FAM160B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM160B2 (select a term)
intoGenFAM160B2
Cancer3DFAM160B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM160B2
Genetic Testing Registry FAM160B2
NextProtQ86V87 [Medical]
TSGene64760
GENETestsFAM160B2
Target ValidationFAM160B2
Huge Navigator FAM160B2 [HugePedia]
snp3D : Map Gene to Disease64760
BioCentury BCIQFAM160B2
ClinGenFAM160B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64760
Chemical/Pharm GKB GenePA162386837
Clinical trialFAM160B2
Miscellaneous
canSAR (ICR)FAM160B2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM160B2
EVEXFAM160B2
GoPubMedFAM160B2
iHOPFAM160B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:53:01 CEST 2017

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