Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM161A (FAM161 centrosomal protein A)

Identity

Alias (NCBI)RP28
HGNC (Hugo) FAM161A
HGNC Alias symbFLJ13305
HGNC Previous nameRP28
HGNC Previous nameretinitis pigmentosa 28 (autosomal recessive)
 family with sequence similarity 161, member A
 family with sequence similarity 161 member A
LocusID (NCBI) 84140
Atlas_Id 54302
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 61824848 and ends at 61854060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
USP34 (2p15) / FAM161A (2p15)USP34 2p15 / FAM161A 2p15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM161A   25808
Cards
Entrez_Gene (NCBI)FAM161A    FAM161 centrosomal protein A
AliasesRP28
GeneCards (Weizmann)FAM161A
Ensembl hg19 (Hinxton)ENSG00000170264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170264 [Gene_View]  ENSG00000170264 [Sequence]  chr2:61824848-61854060 [Contig_View]  FAM161A [Vega]
ICGC DataPortalENSG00000170264
TCGA cBioPortalFAM161A
AceView (NCBI)FAM161A
Genatlas (Paris)FAM161A
SOURCE (Princeton)FAM161A
Genetics Home Reference (NIH)FAM161A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM161A  -     chr2:61824848-61854060 -  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM161A  -     2p15   [Description]    (hg19-Feb_2009)
GoldenPathFAM161A - 2p15 [CytoView hg19]  FAM161A - 2p15 [CytoView hg38]
ImmunoBaseENSG00000170264
Genome Data Viewer NCBIFAM161A [Mapview hg19]  
OMIM606068   613596   
Gene and transcription
Genbank (Entrez)AI690681 AK023367 AK091575 AK296255 AK310908
RefSeq transcript (Entrez)NM_001201543 NM_032180
Consensus coding sequences : CCDS (NCBI)FAM161A
Gene ExpressionFAM161A [ NCBI-GEO ]   FAM161A [ EBI - ARRAY_EXPRESS ]   FAM161A [ SEEK ]   FAM161A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM161A [ Firebrowse - Broad ]
GenevisibleExpression of FAM161A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84140
GTEX Portal (Tissue expression)FAM161A
Human Protein AtlasENSG00000170264-FAM161A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B820   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B820  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B820
PhosPhoSitePlusQ3B820
Domains : Interpro (EBI)UPF0564   
Domain families : Pfam (Sanger)UPF0564 (PF10595)   
Domain families : Pfam (NCBI)pfam10595   
Conserved Domain (NCBI)FAM161A
SuperfamilyQ3B820
AlphaFold pdb e-kbQ3B820   
Human Protein Atlas [tissue]ENSG00000170264-FAM161A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q3B820
IntAct (EBI)Q3B820
BioGRIDFAM161A
STRING (EMBL)FAM161A
ZODIACFAM161A
Ontologies - Pathways
QuickGOQ3B820
Ontology : AmiGOastral microtubule  photoreceptor inner segment  protein binding  centrosome  spindle microtubule  cilium  visual perception  microtubule binding  photoreceptor connecting cilium  photoreceptor connecting cilium  ciliary basal body  identical protein binding  identical protein binding  cilium organization  response to stimulus  cilium assembly  mitotic spindle  mitotic spindle pole  positive regulation of protein acetylation  
Ontology : EGO-EBIastral microtubule  photoreceptor inner segment  protein binding  centrosome  spindle microtubule  cilium  visual perception  microtubule binding  photoreceptor connecting cilium  photoreceptor connecting cilium  ciliary basal body  identical protein binding  identical protein binding  cilium organization  response to stimulus  cilium assembly  mitotic spindle  mitotic spindle pole  positive regulation of protein acetylation  
NDEx NetworkFAM161A
Atlas of Cancer Signalling NetworkFAM161A
Wikipedia pathwaysFAM161A
Orthology - Evolution
OrthoDB84140
GeneTree (enSembl)ENSG00000170264
Phylogenetic Trees/Animal Genes : TreeFamFAM161A
Homologs : HomoloGeneFAM161A
Homology/Alignments : Family Browser (UCSC)FAM161A
Gene fusions - Rearrangements
Fusion : QuiverFAM161A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM161A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM161A
dbVarFAM161A
ClinVarFAM161A
MonarchFAM161A
1000_GenomesFAM161A 
Exome Variant ServerFAM161A
GNOMAD BrowserENSG00000170264
Varsome BrowserFAM161A
ACMGFAM161A variants
VarityQ3B820
Genomic Variants (DGV)FAM161A [DGVbeta]
DECIPHERFAM161A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM161A 
Mutations
ICGC Data PortalFAM161A 
TCGA Data PortalFAM161A 
Broad Tumor PortalFAM161A
OASIS PortalFAM161A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM161A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM161A
Mutations and Diseases : HGMDFAM161A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM161A
DgiDB (Drug Gene Interaction Database)FAM161A
DoCM (Curated mutations)FAM161A
CIViC (Clinical Interpretations of Variants in Cancer)FAM161A
Cancer3DFAM161A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606068    613596   
Orphanet659   
DisGeNETFAM161A
MedgenFAM161A
Genetic Testing Registry FAM161A
NextProtQ3B820 [Medical]
GENETestsFAM161A
Target ValidationFAM161A
Huge Navigator FAM161A [HugePedia]
ClinGenFAM161A
Clinical trials, drugs, therapy
MyCancerGenomeFAM161A
Protein Interactions : CTDFAM161A
Pharm GKB GenePA162386876
PharosQ3B820
Clinical trialFAM161A
Miscellaneous
canSAR (ICR)FAM161A
HarmonizomeFAM161A
DataMed IndexFAM161A
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM161A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:08:51 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.