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FAM161A (family with sequence similarity 161 member A)

Identity

Alias_namesRP28
retinitis pigmentosa 28 (autosomal recessive)
family with sequence similarity 161, member A
Alias_symbol (synonym)FLJ13305
Other alias
HGNC (Hugo) FAM161A
LocusID (NCBI) 84140
Atlas_Id 54302
Location 2p15  [Link to chromosome band 2p15]
Location_base_pair Starts at 61824848 and ends at 61854143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USP34 (2p15) / FAM161A (2p15)USP34 2p15 / FAM161A 2p15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)FAM161A   25808
Cards
Entrez_Gene (NCBI)FAM161A  84140  family with sequence similarity 161 member A
AliasesRP28
GeneCards (Weizmann)FAM161A
Ensembl hg19 (Hinxton)ENSG00000170264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170264 [Gene_View]  chr2:61824848-61854143 [Contig_View]  FAM161A [Vega]
ICGC DataPortalENSG00000170264
TCGA cBioPortalFAM161A
AceView (NCBI)FAM161A
Genatlas (Paris)FAM161A
WikiGenes84140
SOURCE (Princeton)FAM161A
Genetics Home Reference (NIH)FAM161A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM161A  -     chr2:61824848-61854143 -  2p15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM161A  -     2p15   [Description]    (hg19-Feb_2009)
EnsemblFAM161A - 2p15 [CytoView hg19]  FAM161A - 2p15 [CytoView hg38]
Mapping of homologs : NCBIFAM161A [Mapview hg19]  FAM161A [Mapview hg38]
OMIM606068   613596   
Gene and transcription
Genbank (Entrez)AI690681 AK023367 AK091575 AK296255 AK310908
RefSeq transcript (Entrez)NM_001201543 NM_032180
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM161A
Cluster EST : UnigeneHs.440466 [ NCBI ]
CGAP (NCI)Hs.440466
Alternative Splicing GalleryENSG00000170264
Gene ExpressionFAM161A [ NCBI-GEO ]   FAM161A [ EBI - ARRAY_EXPRESS ]   FAM161A [ SEEK ]   FAM161A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM161A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84140
GTEX Portal (Tissue expression)FAM161A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B820   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B820  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B820
Splice isoforms : SwissVarQ3B820
PhosPhoSitePlusQ3B820
Domains : Interpro (EBI)UPF0564   
Domain families : Pfam (Sanger)UPF0564 (PF10595)   
Domain families : Pfam (NCBI)pfam10595   
Conserved Domain (NCBI)FAM161A
DMDM Disease mutations84140
Blocks (Seattle)FAM161A
SuperfamilyQ3B820
Human Protein AtlasENSG00000170264
Peptide AtlasQ3B820
IPIIPI00889578   IPI00745214   IPI00935803   IPI00915937   IPI00894079   IPI00917340   
Protein Interaction databases
DIP (DOE-UCLA)Q3B820
IntAct (EBI)Q3B820
FunCoupENSG00000170264
BioGRIDFAM161A
STRING (EMBL)FAM161A
ZODIACFAM161A
Ontologies - Pathways
QuickGOQ3B820
Ontology : AmiGOprotein binding  cytoplasm  centrosome  visual perception  photoreceptor connecting cilium  ciliary basal body  identical protein binding  response to stimulus  cilium assembly  
Ontology : EGO-EBIprotein binding  cytoplasm  centrosome  visual perception  photoreceptor connecting cilium  ciliary basal body  identical protein binding  response to stimulus  cilium assembly  
NDEx NetworkFAM161A
Atlas of Cancer Signalling NetworkFAM161A
Wikipedia pathwaysFAM161A
Orthology - Evolution
OrthoDB84140
GeneTree (enSembl)ENSG00000170264
Phylogenetic Trees/Animal Genes : TreeFamFAM161A
HOVERGENQ3B820
HOGENOMQ3B820
Homologs : HomoloGeneFAM161A
Homology/Alignments : Family Browser (UCSC)FAM161A
Gene fusions - Rearrangements
Fusion: TCGAUSP34 2p15 FAM161A 2p15 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM161A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM161A
dbVarFAM161A
ClinVarFAM161A
1000_GenomesFAM161A 
Exome Variant ServerFAM161A
ExAC (Exome Aggregation Consortium)FAM161A (select the gene name)
Genetic variants : HAPMAP84140
Genomic Variants (DGV)FAM161A [DGVbeta]
DECIPHERFAM161A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM161A 
Mutations
ICGC Data PortalFAM161A 
TCGA Data PortalFAM161A 
Broad Tumor PortalFAM161A
OASIS PortalFAM161A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM161A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM161A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch FAM161A
DgiDB (Drug Gene Interaction Database)FAM161A
DoCM (Curated mutations)FAM161A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM161A (select a term)
intoGenFAM161A
Cancer3DFAM161A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606068    613596   
Orphanet659   
MedgenFAM161A
Genetic Testing Registry FAM161A
NextProtQ3B820 [Medical]
TSGene84140
GENETestsFAM161A
Target ValidationFAM161A
Huge Navigator FAM161A [HugePedia]
snp3D : Map Gene to Disease84140
BioCentury BCIQFAM161A
ClinGenFAM161A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84140
Chemical/Pharm GKB GenePA162386876
Clinical trialFAM161A
Miscellaneous
canSAR (ICR)FAM161A (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM161A
EVEXFAM161A
GoPubMedFAM161A
iHOPFAM161A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:16 CEST 2017

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