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FAM162A (family with sequence similarity 162 member A)

Identity

Alias_namesC3orf28
chromosome 3 open reading frame 28
family with sequence similarity 162, member A
Alias_symbol (synonym)E2IG5
Other aliasHGTD-P
HGNC (Hugo) FAM162A
LocusID (NCBI) 26355
Atlas_Id 40388
Location 3q21.1  [Link to chromosome band 3q21]
Location_base_pair Starts at 122103023 and ends at 122128961 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EXD2 (14q24.1) / FAM162A (3q21.1)FAM162A (3q21.1) / CASR (3q21.1)FAM162A (3q21.1) / FTH1 (11q12.3)
FTH1 (11q12.3) / FAM162A (3q21.1)FAM162A 3q21.1 / CASR 3q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM162A   17865
Cards
Entrez_Gene (NCBI)FAM162A  26355  family with sequence similarity 162 member A
AliasesC3orf28; E2IG5; HGTD-P
GeneCards (Weizmann)FAM162A
Ensembl hg19 (Hinxton)ENSG00000114023 [Gene_View]  chr3:122103023-122128961 [Contig_View]  FAM162A [Vega]
Ensembl hg38 (Hinxton)ENSG00000114023 [Gene_View]  chr3:122103023-122128961 [Contig_View]  FAM162A [Vega]
ICGC DataPortalENSG00000114023
TCGA cBioPortalFAM162A
AceView (NCBI)FAM162A
Genatlas (Paris)FAM162A
WikiGenes26355
SOURCE (Princeton)FAM162A
Genetics Home Reference (NIH)FAM162A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM162A  -     chr3:122103023-122128961 +  3q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM162A  -     3q21.1   [Description]    (hg38-Dec_2013)
EnsemblFAM162A - 3q21.1 [CytoView hg19]  FAM162A - 3q21.1 [CytoView hg38]
Mapping of homologs : NCBIFAM162A [Mapview hg19]  FAM162A [Mapview hg38]
OMIM608017   
Gene and transcription
Genbank (Entrez)AF107495 AF191020 AF201944 AF250321 AK026030
RefSeq transcript (Entrez)NM_014367
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)FAM162A
Cluster EST : UnigeneHs.584881 [ NCBI ]
CGAP (NCI)Hs.584881
Alternative Splicing GalleryENSG00000114023
Gene ExpressionFAM162A [ NCBI-GEO ]   FAM162A [ EBI - ARRAY_EXPRESS ]   FAM162A [ SEEK ]   FAM162A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM162A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26355
GTEX Portal (Tissue expression)FAM162A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A26
Splice isoforms : SwissVarQ96A26
PhosPhoSitePlusQ96A26
Domains : Interpro (EBI)DUF1075   
Domain families : Pfam (Sanger)DUF1075 (PF06388)   
Domain families : Pfam (NCBI)pfam06388   
Conserved Domain (NCBI)FAM162A
DMDM Disease mutations26355
Blocks (Seattle)FAM162A
SuperfamilyQ96A26
Human Protein AtlasENSG00000114023
Peptide AtlasQ96A26
HPRD06422
IPIIPI00023001   IPI01026401   IPI00883706   IPI00795180   IPI00945585   
Protein Interaction databases
DIP (DOE-UCLA)Q96A26
IntAct (EBI)Q96A26
FunCoupENSG00000114023
BioGRIDFAM162A
STRING (EMBL)FAM162A
ZODIACFAM162A
Ontologies - Pathways
QuickGOQ96A26
Ontology : AmiGOprotein binding  cytoplasm  mitochondrion  activation of cysteine-type endopeptidase activity involved in apoptotic process  transformed cell apoptotic process  integral component of membrane  positive regulation of apoptotic process  neuron apoptotic process  extracellular exosome  cellular response to hypoxia  positive regulation of release of cytochrome c from mitochondria  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrion  activation of cysteine-type endopeptidase activity involved in apoptotic process  transformed cell apoptotic process  integral component of membrane  positive regulation of apoptotic process  neuron apoptotic process  extracellular exosome  cellular response to hypoxia  positive regulation of release of cytochrome c from mitochondria  
NDEx NetworkFAM162A
Atlas of Cancer Signalling NetworkFAM162A
Wikipedia pathwaysFAM162A
Orthology - Evolution
OrthoDB26355
GeneTree (enSembl)ENSG00000114023
Phylogenetic Trees/Animal Genes : TreeFamFAM162A
HOVERGENQ96A26
HOGENOMQ96A26
Homologs : HomoloGeneFAM162A
Homology/Alignments : Family Browser (UCSC)FAM162A
Gene fusions - Rearrangements
Fusion : MitelmanFAM162A/CASR [3q21.1/3q21.1]  
Fusion: TCGAFAM162A 3q21.1 CASR 3q21.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM162A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM162A
dbVarFAM162A
ClinVarFAM162A
1000_GenomesFAM162A 
Exome Variant ServerFAM162A
ExAC (Exome Aggregation Consortium)FAM162A (select the gene name)
Genetic variants : HAPMAP26355
Genomic Variants (DGV)FAM162A [DGVbeta]
DECIPHER (Syndromes)3:122103023-122128961  ENSG00000114023
CONAN: Copy Number AnalysisFAM162A 
Mutations
ICGC Data PortalFAM162A 
TCGA Data PortalFAM162A 
Broad Tumor PortalFAM162A
OASIS PortalFAM162A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM162A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM162A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM162A
DgiDB (Drug Gene Interaction Database)FAM162A
DoCM (Curated mutations)FAM162A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM162A (select a term)
intoGenFAM162A
Cancer3DFAM162A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608017   
Orphanet
MedgenFAM162A
Genetic Testing Registry FAM162A
NextProtQ96A26 [Medical]
TSGene26355
GENETestsFAM162A
Huge Navigator FAM162A [HugePedia]
snp3D : Map Gene to Disease26355
BioCentury BCIQFAM162A
ClinGenFAM162A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26355
Chemical/Pharm GKB GenePA162386916
Clinical trialFAM162A
Miscellaneous
canSAR (ICR)FAM162A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM162A
EVEXFAM162A
GoPubMedFAM162A
iHOPFAM162A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:42 CEST 2017

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