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FAM162B (family with sequence similarity 162 member B)

Identity

Alias_namesC6orf189
chromosome 6 open reading frame 189
family with sequence similarity 162, member B
Alias_symbol (synonym)bA86F4.2
Other alias
HGNC (Hugo) FAM162B
LocusID (NCBI) 221303
Atlas_Id 63057
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116752197 and ends at 116765723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM162B (6q22.1) / ZUFSP (6q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM162B   21549
Cards
Entrez_Gene (NCBI)FAM162B  221303  family with sequence similarity 162 member B
AliasesC6orf189; bA86F4.2
GeneCards (Weizmann)FAM162B
Ensembl hg19 (Hinxton)ENSG00000183807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183807 [Gene_View]  ENSG00000183807 [Sequence]  chr6:116752197-116765723 [Contig_View]  FAM162B [Vega]
ICGC DataPortalENSG00000183807
TCGA cBioPortalFAM162B
AceView (NCBI)FAM162B
Genatlas (Paris)FAM162B
WikiGenes221303
SOURCE (Princeton)FAM162B
Genetics Home Reference (NIH)FAM162B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM162B  -     chr6:116752197-116765723 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM162B  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblFAM162B - 6q22.1 [CytoView hg19]  FAM162B - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIFAM162B [Mapview hg19]  FAM162B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038997 H71557
RefSeq transcript (Entrez)NM_001085480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM162B
Cluster EST : UnigeneHs.126712 [ NCBI ]
CGAP (NCI)Hs.126712
Alternative Splicing GalleryENSG00000183807
Gene ExpressionFAM162B [ NCBI-GEO ]   FAM162B [ EBI - ARRAY_EXPRESS ]   FAM162B [ SEEK ]   FAM162B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM162B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221303
GTEX Portal (Tissue expression)FAM162B
Human Protein AtlasENSG00000183807-FAM162B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6X4
Splice isoforms : SwissVarQ5T6X4
PhosPhoSitePlusQ5T6X4
Domains : Interpro (EBI)DUF1075   
Domain families : Pfam (Sanger)DUF1075 (PF06388)   
Domain families : Pfam (NCBI)pfam06388   
Conserved Domain (NCBI)FAM162B
DMDM Disease mutations221303
Blocks (Seattle)FAM162B
SuperfamilyQ5T6X4
Human Protein Atlas [tissue]ENSG00000183807-FAM162B [tissue]
Peptide AtlasQ5T6X4
IPIIPI00217671   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6X4
IntAct (EBI)Q5T6X4
FunCoupENSG00000183807
BioGRIDFAM162B
STRING (EMBL)FAM162B
ZODIACFAM162B
Ontologies - Pathways
QuickGOQ5T6X4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM162B
Atlas of Cancer Signalling NetworkFAM162B
Wikipedia pathwaysFAM162B
Orthology - Evolution
OrthoDB221303
GeneTree (enSembl)ENSG00000183807
Phylogenetic Trees/Animal Genes : TreeFamFAM162B
HOVERGENQ5T6X4
HOGENOMQ5T6X4
Homologs : HomoloGeneFAM162B
Homology/Alignments : Family Browser (UCSC)FAM162B
Gene fusions - Rearrangements
Fusion : QuiverFAM162B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM162B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM162B
dbVarFAM162B
ClinVarFAM162B
1000_GenomesFAM162B 
Exome Variant ServerFAM162B
ExAC (Exome Aggregation Consortium)ENSG00000183807
GNOMAD BrowserENSG00000183807
Varsome BrowserFAM162B
Genetic variants : HAPMAP221303
Genomic Variants (DGV)FAM162B [DGVbeta]
DECIPHERFAM162B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM162B 
Mutations
ICGC Data PortalFAM162B 
TCGA Data PortalFAM162B 
Broad Tumor PortalFAM162B
OASIS PortalFAM162B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM162B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM162B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM162B
DgiDB (Drug Gene Interaction Database)FAM162B
DoCM (Curated mutations)FAM162B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM162B (select a term)
intoGenFAM162B
Cancer3DFAM162B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM162B
MedgenFAM162B
Genetic Testing Registry FAM162B
NextProtQ5T6X4 [Medical]
TSGene221303
GENETestsFAM162B
Target ValidationFAM162B
Huge Navigator FAM162B [HugePedia]
snp3D : Map Gene to Disease221303
BioCentury BCIQFAM162B
ClinGenFAM162B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221303
Chemical/Pharm GKB GenePA162386931
Clinical trialFAM162B
Miscellaneous
canSAR (ICR)FAM162B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM162B
EVEXFAM162B
GoPubMedFAM162B
iHOPFAM162B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:44:45 CEST 2018

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