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FAM163A (family with sequence similarity 163 member A)

Identity

Alias_namesC1orf76
chromosome 1 open reading frame 76
family with sequence similarity 163, member A
Alias_symbol (synonym)MGC16664
Other aliasNDSP
HGNC (Hugo) FAM163A
LocusID (NCBI) 148753
Atlas_Id 51329
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 179743163 and ends at 179816198 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM163A   28274
Cards
Entrez_Gene (NCBI)FAM163A  148753  family with sequence similarity 163 member A
AliasesC1orf76; NDSP
GeneCards (Weizmann)FAM163A
Ensembl hg19 (Hinxton)ENSG00000143340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143340 [Gene_View]  chr1:179743163-179816198 [Contig_View]  FAM163A [Vega]
ICGC DataPortalENSG00000143340
TCGA cBioPortalFAM163A
AceView (NCBI)FAM163A
Genatlas (Paris)FAM163A
WikiGenes148753
SOURCE (Princeton)FAM163A
Genetics Home Reference (NIH)FAM163A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM163A  -     chr1:179743163-179816198 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM163A  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblFAM163A - 1q25.2 [CytoView hg19]  FAM163A - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBIFAM163A [Mapview hg19]  FAM163A [Mapview hg38]
OMIM611727   
Gene and transcription
Genbank (Entrez)AB299025 AK292432 AK302665 AK310711 AK313887
RefSeq transcript (Entrez)NM_001329712 NM_001329713 NM_001329714 NM_001329715 NM_001329716 NM_001329717 NM_001329718 NM_001329719 NM_173509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM163A
Cluster EST : UnigeneHs.729631 [ NCBI ]
CGAP (NCI)Hs.729631
Alternative Splicing GalleryENSG00000143340
Gene ExpressionFAM163A [ NCBI-GEO ]   FAM163A [ EBI - ARRAY_EXPRESS ]   FAM163A [ SEEK ]   FAM163A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM163A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148753
GTEX Portal (Tissue expression)FAM163A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GL9
Splice isoforms : SwissVarQ96GL9
PhosPhoSitePlusQ96GL9
Domains : Interpro (EBI)FAM163   
Domain families : Pfam (Sanger)FAM163 (PF15069)   
Domain families : Pfam (NCBI)pfam15069   
Conserved Domain (NCBI)FAM163A
DMDM Disease mutations148753
Blocks (Seattle)FAM163A
SuperfamilyQ96GL9
Human Protein AtlasENSG00000143340
Peptide AtlasQ96GL9
HPRD14454
IPIIPI00062596   
Protein Interaction databases
DIP (DOE-UCLA)Q96GL9
IntAct (EBI)Q96GL9
FunCoupENSG00000143340
BioGRIDFAM163A
STRING (EMBL)FAM163A
ZODIACFAM163A
Ontologies - Pathways
QuickGOQ96GL9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM163A
Atlas of Cancer Signalling NetworkFAM163A
Wikipedia pathwaysFAM163A
Orthology - Evolution
OrthoDB148753
GeneTree (enSembl)ENSG00000143340
Phylogenetic Trees/Animal Genes : TreeFamFAM163A
HOVERGENQ96GL9
HOGENOMQ96GL9
Homologs : HomoloGeneFAM163A
Homology/Alignments : Family Browser (UCSC)FAM163A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM163A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM163A
dbVarFAM163A
ClinVarFAM163A
1000_GenomesFAM163A 
Exome Variant ServerFAM163A
ExAC (Exome Aggregation Consortium)FAM163A (select the gene name)
Genetic variants : HAPMAP148753
Genomic Variants (DGV)FAM163A [DGVbeta]
DECIPHERFAM163A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM163A 
Mutations
ICGC Data PortalFAM163A 
TCGA Data PortalFAM163A 
Broad Tumor PortalFAM163A
OASIS PortalFAM163A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM163A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM163A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM163A
DgiDB (Drug Gene Interaction Database)FAM163A
DoCM (Curated mutations)FAM163A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM163A (select a term)
intoGenFAM163A
Cancer3DFAM163A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611727   
Orphanet
MedgenFAM163A
Genetic Testing Registry FAM163A
NextProtQ96GL9 [Medical]
TSGene148753
GENETestsFAM163A
Target ValidationFAM163A
Huge Navigator FAM163A [HugePedia]
snp3D : Map Gene to Disease148753
BioCentury BCIQFAM163A
ClinGenFAM163A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148753
Chemical/Pharm GKB GenePA162386944
Clinical trialFAM163A
Miscellaneous
canSAR (ICR)FAM163A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM163A
EVEXFAM163A
GoPubMedFAM163A
iHOPFAM163A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:00:51 CEST 2017

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