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FAM166A (family with sequence similarity 166 member A)

Identity

Alias_namesfamily with sequence similarity 166
Other aliasHSD46
HGNC (Hugo) FAM166A
LocusID (NCBI) 401565
Atlas_Id 53754
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137243583 and ends at 137247792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM166A   33818
Cards
Entrez_Gene (NCBI)FAM166A  401565  family with sequence similarity 166 member A
AliasesHSD46
GeneCards (Weizmann)FAM166A
Ensembl hg19 (Hinxton)ENSG00000188163 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188163 [Gene_View]  chr9:137243583-137247792 [Contig_View]  FAM166A [Vega]
ICGC DataPortalENSG00000188163
TCGA cBioPortalFAM166A
AceView (NCBI)FAM166A
Genatlas (Paris)FAM166A
WikiGenes401565
SOURCE (Princeton)FAM166A
Genetics Home Reference (NIH)FAM166A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM166A  -     chr9:137243583-137247792 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM166A  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblFAM166A - 9q34.3 [CytoView hg19]  FAM166A - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIFAM166A [Mapview hg19]  FAM166A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097419 AY604177 BC132916 BC132918 HQ258370
RefSeq transcript (Entrez)NM_001001710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM166A
Cluster EST : UnigeneHs.522530 [ NCBI ]
CGAP (NCI)Hs.522530
Alternative Splicing GalleryENSG00000188163
Gene ExpressionFAM166A [ NCBI-GEO ]   FAM166A [ EBI - ARRAY_EXPRESS ]   FAM166A [ SEEK ]   FAM166A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM166A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401565
GTEX Portal (Tissue expression)FAM166A
Human Protein AtlasENSG00000188163-FAM166A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6J272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6J272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6J272
Splice isoforms : SwissVarQ6J272
PhosPhoSitePlusQ6J272
Domains : Interpro (EBI)UPF0573/UPF0605   
Domain families : Pfam (Sanger)DUF2475 (PF10629)   
Domain families : Pfam (NCBI)pfam10629   
Conserved Domain (NCBI)FAM166A
DMDM Disease mutations401565
Blocks (Seattle)FAM166A
SuperfamilyQ6J272
Human Protein Atlas [tissue]ENSG00000188163-FAM166A [tissue]
Peptide AtlasQ6J272
HPRD13441
IPIIPI00746315   IPI00384656   IPI00946712   
Protein Interaction databases
DIP (DOE-UCLA)Q6J272
IntAct (EBI)Q6J272
FunCoupENSG00000188163
BioGRIDFAM166A
STRING (EMBL)FAM166A
ZODIACFAM166A
Ontologies - Pathways
QuickGOQ6J272
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFAM166A
Atlas of Cancer Signalling NetworkFAM166A
Wikipedia pathwaysFAM166A
Orthology - Evolution
OrthoDB401565
GeneTree (enSembl)ENSG00000188163
Phylogenetic Trees/Animal Genes : TreeFamFAM166A
HOVERGENQ6J272
HOGENOMQ6J272
Homologs : HomoloGeneFAM166A
Homology/Alignments : Family Browser (UCSC)FAM166A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM166A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM166A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM166A
dbVarFAM166A
ClinVarFAM166A
1000_GenomesFAM166A 
Exome Variant ServerFAM166A
ExAC (Exome Aggregation Consortium)ENSG00000188163
GNOMAD BrowserENSG00000188163
Genetic variants : HAPMAP401565
Genomic Variants (DGV)FAM166A [DGVbeta]
DECIPHERFAM166A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM166A 
Mutations
ICGC Data PortalFAM166A 
TCGA Data PortalFAM166A 
Broad Tumor PortalFAM166A
OASIS PortalFAM166A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM166A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM166A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM166A
DgiDB (Drug Gene Interaction Database)FAM166A
DoCM (Curated mutations)FAM166A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM166A (select a term)
intoGenFAM166A
Cancer3DFAM166A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM166A
MedgenFAM166A
Genetic Testing Registry FAM166A
NextProtQ6J272 [Medical]
TSGene401565
GENETestsFAM166A
Target ValidationFAM166A
Huge Navigator FAM166A [HugePedia]
snp3D : Map Gene to Disease401565
BioCentury BCIQFAM166A
ClinGenFAM166A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401565
Chemical/Pharm GKB GenePA162387021
Clinical trialFAM166A
Miscellaneous
canSAR (ICR)FAM166A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM166A
EVEXFAM166A
GoPubMedFAM166A
iHOPFAM166A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:12:41 CET 2017

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