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FAM166B (family with sequence similarity 166 member B)

Identity

Alias_namesfamily with sequence similarity 166, member B
Other alias-
HGNC (Hugo) FAM166B
LocusID (NCBI) 730112
Atlas_Id 63059
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35561830 and ends at 35563899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPL10A (6p21.31) / FAM166B (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM166B   34242
Cards
Entrez_Gene (NCBI)FAM166B  730112  family with sequence similarity 166 member B
Aliases
GeneCards (Weizmann)FAM166B
Ensembl hg19 (Hinxton)ENSG00000215187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215187 [Gene_View]  chr9:35561830-35563899 [Contig_View]  FAM166B [Vega]
ICGC DataPortalENSG00000215187
TCGA cBioPortalFAM166B
AceView (NCBI)FAM166B
Genatlas (Paris)FAM166B
WikiGenes730112
SOURCE (Princeton)FAM166B
Genetics Home Reference (NIH)FAM166B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM166B  -     chr9:35561830-35563899 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM166B  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM166B - 9p13.3 [CytoView hg19]  FAM166B - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM166B [Mapview hg19]  FAM166B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI383111 BC129999 BC146928 BC146933 BC171840
RefSeq transcript (Entrez)NM_001099951 NM_001164310 NM_001287238 NM_001287239
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM166B
Cluster EST : UnigeneHs.98959 [ NCBI ]
CGAP (NCI)Hs.98959
Alternative Splicing GalleryENSG00000215187
Gene ExpressionFAM166B [ NCBI-GEO ]   FAM166B [ EBI - ARRAY_EXPRESS ]   FAM166B [ SEEK ]   FAM166B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM166B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730112
GTEX Portal (Tissue expression)FAM166B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTA8
Splice isoforms : SwissVarA8MTA8
PhosPhoSitePlusA8MTA8
Domains : Interpro (EBI)UPF0573/UPF0605   
Domain families : Pfam (Sanger)DUF2475 (PF10629)   
Domain families : Pfam (NCBI)pfam10629   
Conserved Domain (NCBI)FAM166B
DMDM Disease mutations730112
Blocks (Seattle)FAM166B
SuperfamilyA8MTA8
Human Protein AtlasENSG00000215187
Peptide AtlasA8MTA8
IPIIPI00787952   IPI00900265   IPI00922129   
Protein Interaction databases
DIP (DOE-UCLA)A8MTA8
IntAct (EBI)A8MTA8
FunCoupENSG00000215187
BioGRIDFAM166B
STRING (EMBL)FAM166B
ZODIACFAM166B
Ontologies - Pathways
QuickGOA8MTA8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM166B
Atlas of Cancer Signalling NetworkFAM166B
Wikipedia pathwaysFAM166B
Orthology - Evolution
OrthoDB730112
GeneTree (enSembl)ENSG00000215187
Phylogenetic Trees/Animal Genes : TreeFamFAM166B
HOVERGENA8MTA8
HOGENOMA8MTA8
Homologs : HomoloGeneFAM166B
Homology/Alignments : Family Browser (UCSC)FAM166B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM166B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM166B
dbVarFAM166B
ClinVarFAM166B
1000_GenomesFAM166B 
Exome Variant ServerFAM166B
ExAC (Exome Aggregation Consortium)FAM166B (select the gene name)
Genetic variants : HAPMAP730112
Genomic Variants (DGV)FAM166B [DGVbeta]
DECIPHERFAM166B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM166B 
Mutations
ICGC Data PortalFAM166B 
TCGA Data PortalFAM166B 
Broad Tumor PortalFAM166B
OASIS PortalFAM166B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM166B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM166B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM166B
DgiDB (Drug Gene Interaction Database)FAM166B
DoCM (Curated mutations)FAM166B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM166B (select a term)
intoGenFAM166B
Cancer3DFAM166B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM166B
Genetic Testing Registry FAM166B
NextProtA8MTA8 [Medical]
TSGene730112
GENETestsFAM166B
Target ValidationFAM166B
Huge Navigator FAM166B [HugePedia]
snp3D : Map Gene to Disease730112
BioCentury BCIQFAM166B
ClinGenFAM166B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730112
Chemical/Pharm GKB GenePA162387040
Clinical trialFAM166B
Miscellaneous
canSAR (ICR)FAM166B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM166B
EVEXFAM166B
GoPubMedFAM166B
iHOPFAM166B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:40 CEST 2017

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