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FAM167A-AS1 (FAM167A antisense RNA 1)

Identity

Alias_namesC8orf12
chromosome 8 open reading frame 12
Other alias
HGNC (Hugo) FAM167A-AS1
LocusID (NCBI) 83656
Atlas_Id 63061
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11368402 and ends at 11438657 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM167A-AS1 (8p23.1) / FAM167A-AS1 (8p23.1)FAM167A-AS1 (8p23.1) / FGD1 (Xp11.22)FAM167A-AS1 (8p23.1) / POP1 (8q22.2)
MTDH (8q22.1) / FAM167A-AS1 (8p23.1)WARS (14q32.2) / FAM167A-AS1 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM167A-AS1   15548
Cards
Entrez_Gene (NCBI)FAM167A-AS1  83656  FAM167A antisense RNA 1
AliasesC8orf12
GeneCards (Weizmann)FAM167A-AS1
Ensembl hg19 (Hinxton)ENSG00000184608 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184608 [Gene_View]  chr8:11368402-11438657 [Contig_View]  FAM167A-AS1 [Vega]
ICGC DataPortalENSG00000184608
TCGA cBioPortalFAM167A-AS1
AceView (NCBI)FAM167A-AS1
Genatlas (Paris)FAM167A-AS1
WikiGenes83656
SOURCE (Princeton)FAM167A-AS1
Genetics Home Reference (NIH)FAM167A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM167A-AS1  -     chr8:11368402-11438657 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM167A-AS1  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblFAM167A-AS1 - 8p23.1 [CytoView hg19]  FAM167A-AS1 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM167A-AS1 [Mapview hg19]  FAM167A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ301563 BC080558
RefSeq transcript (Entrez)NM_054017
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM167A-AS1
Cluster EST : UnigeneHs.583896 [ NCBI ]
CGAP (NCI)Hs.583896
Alternative Splicing GalleryENSG00000184608
Gene ExpressionFAM167A-AS1 [ NCBI-GEO ]   FAM167A-AS1 [ EBI - ARRAY_EXPRESS ]   FAM167A-AS1 [ SEEK ]   FAM167A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM167A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83656
GTEX Portal (Tissue expression)FAM167A-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KT0
Splice isoforms : SwissVarQ96KT0
PhosPhoSitePlusQ96KT0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM167A-AS1
DMDM Disease mutations83656
Blocks (Seattle)FAM167A-AS1
SuperfamilyQ96KT0
Human Protein AtlasENSG00000184608
Peptide AtlasQ96KT0
IPIIPI00064793   
Protein Interaction databases
DIP (DOE-UCLA)Q96KT0
IntAct (EBI)Q96KT0
FunCoupENSG00000184608
BioGRIDFAM167A-AS1
STRING (EMBL)FAM167A-AS1
ZODIACFAM167A-AS1
Ontologies - Pathways
QuickGOQ96KT0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM167A-AS1
Atlas of Cancer Signalling NetworkFAM167A-AS1
Wikipedia pathwaysFAM167A-AS1
Orthology - Evolution
OrthoDB83656
GeneTree (enSembl)ENSG00000184608
Phylogenetic Trees/Animal Genes : TreeFamFAM167A-AS1
HOVERGENQ96KT0
HOGENOMQ96KT0
Homologs : HomoloGeneFAM167A-AS1
Homology/Alignments : Family Browser (UCSC)FAM167A-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM167A-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM167A-AS1
dbVarFAM167A-AS1
ClinVarFAM167A-AS1
1000_GenomesFAM167A-AS1 
Exome Variant ServerFAM167A-AS1
ExAC (Exome Aggregation Consortium)FAM167A-AS1 (select the gene name)
Genetic variants : HAPMAP83656
Genomic Variants (DGV)FAM167A-AS1 [DGVbeta]
DECIPHERFAM167A-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM167A-AS1 
Mutations
ICGC Data PortalFAM167A-AS1 
TCGA Data PortalFAM167A-AS1 
Broad Tumor PortalFAM167A-AS1
OASIS PortalFAM167A-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM167A-AS1
BioMutasearch FAM167A-AS1
DgiDB (Drug Gene Interaction Database)FAM167A-AS1
DoCM (Curated mutations)FAM167A-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM167A-AS1 (select a term)
intoGenFAM167A-AS1
Cancer3DFAM167A-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM167A-AS1
Genetic Testing Registry FAM167A-AS1
NextProtQ96KT0 [Medical]
TSGene83656
GENETestsFAM167A-AS1
Huge Navigator FAM167A-AS1 [HugePedia]
snp3D : Map Gene to Disease83656
BioCentury BCIQFAM167A-AS1
ClinGenFAM167A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83656
Chemical/Pharm GKB GenePA25955
Clinical trialFAM167A-AS1
Miscellaneous
canSAR (ICR)FAM167A-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM167A-AS1
EVEXFAM167A-AS1
GoPubMedFAM167A-AS1
iHOPFAM167A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:10:43 CEST 2017

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