Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM167A (family with sequence similarity 167, member A)

Identity

Alias_namesC8orf13
chromosome 8 open reading frame 13
family with sequence similarity 167, member A
Other aliasD8S265
HGNC (Hugo) FAM167A
LocusID (NCBI) 83648
Atlas_Id 63060
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11278973 and ends at 11324276 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM167A (8p23.1) / FAM167A (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM167A   15549
Cards
Entrez_Gene (NCBI)FAM167A  83648  family with sequence similarity 167, member A
AliasesC8orf13; D8S265
GeneCards (Weizmann)FAM167A
Ensembl hg19 (Hinxton)ENSG00000154319 [Gene_View]  chr8:11278973-11324276 [Contig_View]  FAM167A [Vega]
Ensembl hg38 (Hinxton)ENSG00000154319 [Gene_View]  chr8:11278973-11324276 [Contig_View]  FAM167A [Vega]
ICGC DataPortalENSG00000154319
TCGA cBioPortalFAM167A
AceView (NCBI)FAM167A
Genatlas (Paris)FAM167A
WikiGenes83648
SOURCE (Princeton)FAM167A
Genetics Home Reference (NIH)FAM167A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM167A  -     chr8:11278973-11324276 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM167A  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblFAM167A - 8p23.1 [CytoView hg19]  FAM167A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM167A [Mapview hg19]  FAM167A [Mapview hg38]
OMIM610085   
Gene and transcription
Genbank (Entrez)AJ301564 AK290704 AL157475 AL522457 AL834122
RefSeq transcript (Entrez)NM_053279
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)FAM167A
Cluster EST : UnigeneHs.124299 [ NCBI ]
CGAP (NCI)Hs.124299
Alternative Splicing GalleryENSG00000154319
Gene ExpressionFAM167A [ NCBI-GEO ]   FAM167A [ EBI - ARRAY_EXPRESS ]   FAM167A [ SEEK ]   FAM167A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM167A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83648
GTEX Portal (Tissue expression)FAM167A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KS9
Splice isoforms : SwissVarQ96KS9
PhosPhoSitePlusQ96KS9
Domains : Interpro (EBI)FAM167   
Domain families : Pfam (Sanger)DUF3259 (PF11652)   
Domain families : Pfam (NCBI)pfam11652   
Domain structure : Prodom (Prabi Lyon)PD479129 (PD479129)   
Conserved Domain (NCBI)FAM167A
DMDM Disease mutations83648
Blocks (Seattle)FAM167A
SuperfamilyQ96KS9
Human Protein AtlasENSG00000154319
Peptide AtlasQ96KS9
HPRD12924
IPIIPI00376475   IPI00743770   IPI01011104   
Protein Interaction databases
DIP (DOE-UCLA)Q96KS9
IntAct (EBI)Q96KS9
FunCoupENSG00000154319
BioGRIDFAM167A
STRING (EMBL)FAM167A
ZODIACFAM167A
Ontologies - Pathways
QuickGOQ96KS9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM167A
Atlas of Cancer Signalling NetworkFAM167A
Wikipedia pathwaysFAM167A
Orthology - Evolution
OrthoDB83648
GeneTree (enSembl)ENSG00000154319
Phylogenetic Trees/Animal Genes : TreeFamFAM167A
HOVERGENQ96KS9
HOGENOMQ96KS9
Homologs : HomoloGeneFAM167A
Homology/Alignments : Family Browser (UCSC)FAM167A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM167A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM167A
dbVarFAM167A
ClinVarFAM167A
1000_GenomesFAM167A 
Exome Variant ServerFAM167A
ExAC (Exome Aggregation Consortium)FAM167A (select the gene name)
Genetic variants : HAPMAP83648
Genomic Variants (DGV)FAM167A [DGVbeta]
DECIPHER (Syndromes)8:11278973-11324276  ENSG00000154319
CONAN: Copy Number AnalysisFAM167A 
Mutations
ICGC Data PortalFAM167A 
TCGA Data PortalFAM167A 
Broad Tumor PortalFAM167A
OASIS PortalFAM167A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM167A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM167A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM167A
DgiDB (Drug Gene Interaction Database)FAM167A
DoCM (Curated mutations)FAM167A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM167A (select a term)
intoGenFAM167A
Cancer3DFAM167A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610085   
Orphanet
MedgenFAM167A
Genetic Testing Registry FAM167A
NextProtQ96KS9 [Medical]
TSGene83648
GENETestsFAM167A
Huge Navigator FAM167A [HugePedia]
snp3D : Map Gene to Disease83648
BioCentury BCIQFAM167A
ClinGenFAM167A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83648
Chemical/Pharm GKB GenePA162387057
Clinical trialFAM167A
Miscellaneous
canSAR (ICR)FAM167A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM167A
EVEXFAM167A
GoPubMedFAM167A
iHOPFAM167A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:03:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.