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FAM168A (family with sequence similarity 168 member A)

Identity

Alias_namesKIAA0280
KIAA0280
family with sequence similarity 168, member A
Alias_symbol (synonym)TCRP1
Other alias
HGNC (Hugo) FAM168A
LocusID (NCBI) 23201
Atlas_Id 52609
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 73400478 and ends at 73598189 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM168A (11q13.4) / C2CD3 (11q13.4)FAM168A (11q13.4) / DNAJB13 (11q13.4)FAM168A (11q13.4) / EMSY (11q13.5)
FAM168A (11q13.4) / PTCRA (6p21.1)FAM168A (11q13.4) / PXDNL (8q11.22)FAM168A (11q13.4) / RAB6A (11q13.4)
FAM168A (11q13.4) / SLC13A2 (17q11.2)FAM168A (11q13.4) / UVRAG (11q13.5)FCHSD2 (11q13.4) / FAM168A (11q13.4)
MARK2 (11q13.1) / FAM168A (11q13.4)MRPL21 (11q13.3) / FAM168A (11q13.4)SOX10 (22q13.1) / FAM168A (11q13.4)
UVRAG (11q13.5) / FAM168A (11q13.4)XRRA1 (11q13.4) / FAM168A (11q13.4)FAM168A 11q13.4 / C2CD3 11q13.4
FAM168A 11q13.4 / DNAJB13 11q13.4FAM168A 11q13.4 / PTCRA 6p21.1FAM168A 11q13.4 / PXDNL 8q11.22
FAM168A 11q13.4 / RAB6A 11q13.4FAM168A 11q13.4 / SLC13A2 17q11.2FAM168A 11q13.4 / UVRAG 11q13.5
FCHSD2 11q13.4 / FAM168A 11q13.4MARK2 11q13.1 / FAM168A 11q13.4MRPL21 11q13.3 / FAM168A 11q13.4
SOX10 22q13.1 / FAM168A 11q13.4UVRAG 11q13.5 / FAM168A 11q13.4XRRA1 11q13.4 / FAM168A 11q13.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM168A   28999
Cards
Entrez_Gene (NCBI)FAM168A  23201  family with sequence similarity 168 member A
AliasesKIAA0280; TCRP1
GeneCards (Weizmann)FAM168A
Ensembl hg19 (Hinxton)ENSG00000054965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054965 [Gene_View]  chr11:73400478-73598189 [Contig_View]  FAM168A [Vega]
ICGC DataPortalENSG00000054965
TCGA cBioPortalFAM168A
AceView (NCBI)FAM168A
Genatlas (Paris)FAM168A
WikiGenes23201
SOURCE (Princeton)FAM168A
Genetics Home Reference (NIH)FAM168A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM168A  -     chr11:73400478-73598189 -  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM168A  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblFAM168A - 11q13.4 [CytoView hg19]  FAM168A - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBIFAM168A [Mapview hg19]  FAM168A [Mapview hg38]
OMIM616316   
Gene and transcription
Genbank (Entrez)AK292054 BC014932 BC052341 D87470 DB074440
RefSeq transcript (Entrez)NM_001286050 NM_001286051 NM_015159
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM168A
Cluster EST : UnigeneHs.475334 [ NCBI ]
CGAP (NCI)Hs.475334
Alternative Splicing GalleryENSG00000054965
Gene ExpressionFAM168A [ NCBI-GEO ]   FAM168A [ EBI - ARRAY_EXPRESS ]   FAM168A [ SEEK ]   FAM168A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM168A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23201
GTEX Portal (Tissue expression)FAM168A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92567
Splice isoforms : SwissVarQ92567
PhosPhoSitePlusQ92567
Domains : Interpro (EBI)FAM168A/MANI   
Domain families : Pfam (Sanger)TCRP1 (PF14944)   
Domain families : Pfam (NCBI)pfam14944   
Conserved Domain (NCBI)FAM168A
DMDM Disease mutations23201
Blocks (Seattle)FAM168A
SuperfamilyQ92567
Human Protein AtlasENSG00000054965
Peptide AtlasQ92567
IPIIPI00022028   IPI00410619   IPI00827659   
Protein Interaction databases
DIP (DOE-UCLA)Q92567
IntAct (EBI)Q92567
FunCoupENSG00000054965
BioGRIDFAM168A
STRING (EMBL)FAM168A
ZODIACFAM168A
Ontologies - Pathways
QuickGOQ92567
Ontology : AmiGOprotein binding  positive regulation of base-excision repair  
Ontology : EGO-EBIprotein binding  positive regulation of base-excision repair  
NDEx NetworkFAM168A
Atlas of Cancer Signalling NetworkFAM168A
Wikipedia pathwaysFAM168A
Orthology - Evolution
OrthoDB23201
GeneTree (enSembl)ENSG00000054965
Phylogenetic Trees/Animal Genes : TreeFamFAM168A
HOVERGENQ92567
HOGENOMQ92567
Homologs : HomoloGeneFAM168A
Homology/Alignments : Family Browser (UCSC)FAM168A
Gene fusions - Rearrangements
Fusion : MitelmanFAM168A/C2CD3 [11q13.4/11q13.4]  
Fusion : MitelmanFAM168A/DNAJB13 [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanFAM168A/PTCRA [11q13.4/6p21.1]  [t(6;11)(p21;q13)]  
Fusion : MitelmanFAM168A/PXDNL [11q13.4/8q11.22]  [t(8;11)(q11;q13)]  
Fusion : MitelmanFAM168A/RAB6A [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanFAM168A/SLC13A2 [11q13.4/17q11.2]  [t(11;17)(q13;q11)]  
Fusion : MitelmanFAM168A/UVRAG [11q13.4/11q13.5]  [t(11;11)(q13;q13)]  
Fusion : MitelmanFCHSD2/FAM168A [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanMARK2/FAM168A [11q13.1/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanMRPL21/FAM168A [11q13.3/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanSOX10/FAM168A [22q13.1/11q13.4]  [t(11;22)(q13;q13)]  
Fusion : MitelmanUVRAG/FAM168A [11q13.5/11q13.4]  [t(11;11)(q13;q13)]  
Fusion : MitelmanXRRA1/FAM168A [11q13.4/11q13.4]  [t(11;11)(q13;q13)]  
Fusion: TCGAFAM168A 11q13.4 C2CD3 11q13.4 LUAD
Fusion: TCGAFAM168A 11q13.4 DNAJB13 11q13.4 BRCA
Fusion: TCGAFAM168A 11q13.4 PTCRA 6p21.1 BRCA
Fusion: TCGAFAM168A 11q13.4 PXDNL 8q11.22 SKCM
Fusion: TCGAFAM168A 11q13.4 RAB6A 11q13.4 LUAD
Fusion: TCGAFAM168A 11q13.4 SLC13A2 17q11.2 BRCA
Fusion: TCGAFAM168A 11q13.4 UVRAG 11q13.5 BRCA
Fusion: TCGAFCHSD2 11q13.4 FAM168A 11q13.4 BRCA
Fusion: TCGAMARK2 11q13.1 FAM168A 11q13.4 BRCA
Fusion: TCGAMRPL21 11q13.3 FAM168A 11q13.4 BRCA LUSC
Fusion: TCGASOX10 22q13.1 FAM168A 11q13.4 LGG
Fusion: TCGAUVRAG 11q13.5 FAM168A 11q13.4 OV
Fusion: TCGAXRRA1 11q13.4 FAM168A 11q13.4 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM168A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM168A
dbVarFAM168A
ClinVarFAM168A
1000_GenomesFAM168A 
Exome Variant ServerFAM168A
ExAC (Exome Aggregation Consortium)FAM168A (select the gene name)
Genetic variants : HAPMAP23201
Genomic Variants (DGV)FAM168A [DGVbeta]
DECIPHERFAM168A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM168A 
Mutations
ICGC Data PortalFAM168A 
TCGA Data PortalFAM168A 
Broad Tumor PortalFAM168A
OASIS PortalFAM168A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM168A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM168A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM168A
DgiDB (Drug Gene Interaction Database)FAM168A
DoCM (Curated mutations)FAM168A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM168A (select a term)
intoGenFAM168A
Cancer3DFAM168A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616316   
Orphanet
MedgenFAM168A
Genetic Testing Registry FAM168A
NextProtQ92567 [Medical]
TSGene23201
GENETestsFAM168A
Target ValidationFAM168A
Huge Navigator FAM168A [HugePedia]
snp3D : Map Gene to Disease23201
BioCentury BCIQFAM168A
ClinGenFAM168A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23201
Chemical/Pharm GKB GenePA162387077
Clinical trialFAM168A
Miscellaneous
canSAR (ICR)FAM168A (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM168A
EVEXFAM168A
GoPubMedFAM168A
iHOPFAM168A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:33:17 CEST 2017

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