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FAM169A (family with sequence similarity 169, member A)

Identity

Alias_namesfamily with sequence similarity 169, member A
Alias_symbol (synonym)KIAA0888
Other aliasSLAP75
HGNC (Hugo) FAM169A
LocusID (NCBI) 26049
Atlas_Id 63064
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 74073399 and ends at 74162663 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM169A (5q13.3) / ANKRD31 (5q13.3)TNFSF4 (1q25.1) / FAM169A (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM169A   29138
Cards
Entrez_Gene (NCBI)FAM169A  26049  family with sequence similarity 169, member A
AliasesSLAP75
GeneCards (Weizmann)FAM169A
Ensembl hg19 (Hinxton)ENSG00000198780 [Gene_View]  chr5:74073399-74162663 [Contig_View]  FAM169A [Vega]
Ensembl hg38 (Hinxton)ENSG00000198780 [Gene_View]  chr5:74073399-74162663 [Contig_View]  FAM169A [Vega]
ICGC DataPortalENSG00000198780
TCGA cBioPortalFAM169A
AceView (NCBI)FAM169A
Genatlas (Paris)FAM169A
WikiGenes26049
SOURCE (Princeton)FAM169A
Genetics Home Reference (NIH)FAM169A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM169A  -     chr5:74073399-74162663 -  5q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM169A  -     5q13.3   [Description]    (hg38-Dec_2013)
EnsemblFAM169A - 5q13.3 [CytoView hg19]  FAM169A - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM169A [Mapview hg19]  FAM169A [Mapview hg38]
OMIM615769   
Gene and transcription
Genbank (Entrez)AB020695 AK022981 AK290004 BC040298 BC044766
RefSeq transcript (Entrez)NM_015566
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)FAM169A
Cluster EST : UnigeneHs.91662 [ NCBI ]
CGAP (NCI)Hs.91662
Alternative Splicing GalleryENSG00000198780
Gene ExpressionFAM169A [ NCBI-GEO ]   FAM169A [ EBI - ARRAY_EXPRESS ]   FAM169A [ SEEK ]   FAM169A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM169A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26049
GTEX Portal (Tissue expression)FAM169A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6X4
Splice isoforms : SwissVarQ9Y6X4
PhosPhoSitePlusQ9Y6X4
Domains : Interpro (EBI)FAM169    FAM169A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM169A
DMDM Disease mutations26049
Blocks (Seattle)FAM169A
SuperfamilyQ9Y6X4
Human Protein AtlasENSG00000198780
Peptide AtlasQ9Y6X4
IPIIPI00737638   IPI00426037   IPI00966459   IPI00965904   IPI00967999   IPI00966211   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6X4
IntAct (EBI)Q9Y6X4
FunCoupENSG00000198780
BioGRIDFAM169A
STRING (EMBL)FAM169A
ZODIACFAM169A
Ontologies - Pathways
QuickGOQ9Y6X4
Ontology : AmiGOnuclear inner membrane  
Ontology : EGO-EBInuclear inner membrane  
NDEx NetworkFAM169A
Atlas of Cancer Signalling NetworkFAM169A
Wikipedia pathwaysFAM169A
Orthology - Evolution
OrthoDB26049
GeneTree (enSembl)ENSG00000198780
Phylogenetic Trees/Animal Genes : TreeFamFAM169A
HOVERGENQ9Y6X4
HOGENOMQ9Y6X4
Homologs : HomoloGeneFAM169A
Homology/Alignments : Family Browser (UCSC)FAM169A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM169A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM169A
dbVarFAM169A
ClinVarFAM169A
1000_GenomesFAM169A 
Exome Variant ServerFAM169A
ExAC (Exome Aggregation Consortium)FAM169A (select the gene name)
Genetic variants : HAPMAP26049
Genomic Variants (DGV)FAM169A [DGVbeta]
DECIPHER (Syndromes)5:74073399-74162663  ENSG00000198780
CONAN: Copy Number AnalysisFAM169A 
Mutations
ICGC Data PortalFAM169A 
TCGA Data PortalFAM169A 
Broad Tumor PortalFAM169A
OASIS PortalFAM169A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM169A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM169A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM169A
DgiDB (Drug Gene Interaction Database)FAM169A
DoCM (Curated mutations)FAM169A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM169A (select a term)
intoGenFAM169A
Cancer3DFAM169A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615769   
Orphanet
MedgenFAM169A
Genetic Testing Registry FAM169A
NextProtQ9Y6X4 [Medical]
TSGene26049
GENETestsFAM169A
Huge Navigator FAM169A [HugePedia]
snp3D : Map Gene to Disease26049
BioCentury BCIQFAM169A
ClinGenFAM169A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26049
Chemical/Pharm GKB GenePA162387117
Clinical trialFAM169A
Miscellaneous
canSAR (ICR)FAM169A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM169A
EVEXFAM169A
GoPubMedFAM169A
iHOPFAM169A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:38 CET 2017

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