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FAM170A (family with sequence similarity 170 member A)

Identity

Alias_namesfamily with sequence similarity 170, member A
Other aliasZNFD
HGNC (Hugo) FAM170A
LocusID (NCBI) 340069
Atlas_Id 63066
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 119629559 and ends at 119635822 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM170A   27963
Cards
Entrez_Gene (NCBI)FAM170A  340069  family with sequence similarity 170 member A
AliasesZNFD
GeneCards (Weizmann)FAM170A
Ensembl hg19 (Hinxton)ENSG00000164334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164334 [Gene_View]  chr5:119629559-119635822 [Contig_View]  FAM170A [Vega]
ICGC DataPortalENSG00000164334
TCGA cBioPortalFAM170A
AceView (NCBI)FAM170A
Genatlas (Paris)FAM170A
WikiGenes340069
SOURCE (Princeton)FAM170A
Genetics Home Reference (NIH)FAM170A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM170A  -     chr5:119629559-119635822 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM170A  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblFAM170A - 5q23.1 [CytoView hg19]  FAM170A - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBIFAM170A [Mapview hg19]  FAM170A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF427126 AY692447 BC040622 BC128242 BC128243
RefSeq transcript (Entrez)NM_001163991 NM_182761
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM170A
Cluster EST : UnigeneHs.713304 [ NCBI ]
CGAP (NCI)Hs.713304
Alternative Splicing GalleryENSG00000164334
Gene ExpressionFAM170A [ NCBI-GEO ]   FAM170A [ EBI - ARRAY_EXPRESS ]   FAM170A [ SEEK ]   FAM170A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM170A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340069
GTEX Portal (Tissue expression)FAM170A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A519   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A519  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A519
Splice isoforms : SwissVarA1A519
PhosPhoSitePlusA1A519
Domains : Interpro (EBI)FAM170A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM170A
DMDM Disease mutations340069
Blocks (Seattle)FAM170A
SuperfamilyA1A519
Human Protein AtlasENSG00000164334
Peptide AtlasA1A519
HPRD14174
IPIIPI00217198   IPI00887622   IPI00470952   IPI00384045   IPI00968100   IPI00829695   
Protein Interaction databases
DIP (DOE-UCLA)A1A519
IntAct (EBI)A1A519
FunCoupENSG00000164334
BioGRIDFAM170A
STRING (EMBL)FAM170A
ZODIACFAM170A
Ontologies - Pathways
QuickGOA1A519
Ontology : AmiGODNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkFAM170A
Atlas of Cancer Signalling NetworkFAM170A
Wikipedia pathwaysFAM170A
Orthology - Evolution
OrthoDB340069
GeneTree (enSembl)ENSG00000164334
Phylogenetic Trees/Animal Genes : TreeFamFAM170A
HOVERGENA1A519
HOGENOMA1A519
Homologs : HomoloGeneFAM170A
Homology/Alignments : Family Browser (UCSC)FAM170A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM170A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM170A
dbVarFAM170A
ClinVarFAM170A
1000_GenomesFAM170A 
Exome Variant ServerFAM170A
ExAC (Exome Aggregation Consortium)FAM170A (select the gene name)
Genetic variants : HAPMAP340069
Genomic Variants (DGV)FAM170A [DGVbeta]
DECIPHERFAM170A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM170A 
Mutations
ICGC Data PortalFAM170A 
TCGA Data PortalFAM170A 
Broad Tumor PortalFAM170A
OASIS PortalFAM170A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM170A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM170A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM170A
DgiDB (Drug Gene Interaction Database)FAM170A
DoCM (Curated mutations)FAM170A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM170A (select a term)
intoGenFAM170A
Cancer3DFAM170A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM170A
Genetic Testing Registry FAM170A
NextProtA1A519 [Medical]
TSGene340069
GENETestsFAM170A
Target ValidationFAM170A
Huge Navigator FAM170A [HugePedia]
snp3D : Map Gene to Disease340069
BioCentury BCIQFAM170A
ClinGenFAM170A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340069
Chemical/Pharm GKB GenePA162387167
Clinical trialFAM170A
Miscellaneous
canSAR (ICR)FAM170A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM170A
EVEXFAM170A
GoPubMedFAM170A
iHOPFAM170A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:41 CEST 2017

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