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FAM170B (family with sequence similarity 170 member B)

Identity

Alias (NCBI)C10orf73
HGNC (Hugo) FAM170B
HGNC Alias symbEm:AC084727.4
HGNC Previous nameC10orf73
HGNC Previous namechromosome 10 open reading frame 73
 family with sequence similarity 170, member B
LocusID (NCBI) 170370
Atlas_Id 63067
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49131156 and ends at 49134020 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAM170B   19736
Cards
Entrez_Gene (NCBI)FAM170B    family with sequence similarity 170 member B
AliasesC10orf73
GeneCards (Weizmann)FAM170B
Ensembl hg19 (Hinxton)ENSG00000172538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172538 [Gene_View]  ENSG00000172538 [Sequence]  chr10:49131156-49134020 [Contig_View]  FAM170B [Vega]
ICGC DataPortalENSG00000172538
TCGA cBioPortalFAM170B
AceView (NCBI)FAM170B
Genatlas (Paris)FAM170B
SOURCE (Princeton)FAM170B
Genetics Home Reference (NIH)FAM170B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM170B  -     chr10:49131156-49134020 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM170B  -     10q11.23   [Description]    (hg19-Feb_2009)
GoldenPathFAM170B - 10q11.23 [CytoView hg19]  FAM170B - 10q11.23 [CytoView hg38]
ImmunoBaseENSG00000172538
genome Data Viewer NCBIFAM170B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC029839 BC047597
RefSeq transcript (Entrez)NM_001164484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM170B
Alternative Splicing GalleryENSG00000172538
Gene ExpressionFAM170B [ NCBI-GEO ]   FAM170B [ EBI - ARRAY_EXPRESS ]   FAM170B [ SEEK ]   FAM170B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM170B [ Firebrowse - Broad ]
GenevisibleExpression of FAM170B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170370
GTEX Portal (Tissue expression)FAM170B
Human Protein AtlasENSG00000172538-FAM170B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMN3
Splice isoforms : SwissVarA6NMN3
PhosPhoSitePlusA6NMN3
Domains : Interpro (EBI)FAM170B    Spt46-like   
Domain families : Pfam (Sanger)Spt46 (PF17734)   
Domain families : Pfam (NCBI)pfam17734   
Conserved Domain (NCBI)FAM170B
Blocks (Seattle)FAM170B
SuperfamilyA6NMN3
Human Protein Atlas [tissue]ENSG00000172538-FAM170B [tissue]
Peptide AtlasA6NMN3
IPIIPI00329168   
Protein Interaction databases
DIP (DOE-UCLA)A6NMN3
IntAct (EBI)A6NMN3
BioGRIDFAM170B
STRING (EMBL)FAM170B
ZODIACFAM170B
Ontologies - Pathways
QuickGOA6NMN3
Ontology : AmiGOacrosomal vesicle  acrosomal vesicle  outer acrosomal membrane  protein binding  regulation of fertilization  positive regulation of acrosome reaction  positive regulation of acrosome reaction  
Ontology : EGO-EBIacrosomal vesicle  acrosomal vesicle  outer acrosomal membrane  protein binding  regulation of fertilization  positive regulation of acrosome reaction  positive regulation of acrosome reaction  
NDEx NetworkFAM170B
Atlas of Cancer Signalling NetworkFAM170B
Wikipedia pathwaysFAM170B
Orthology - Evolution
OrthoDB170370
GeneTree (enSembl)ENSG00000172538
Phylogenetic Trees/Animal Genes : TreeFamFAM170B
HOGENOMA6NMN3
Homologs : HomoloGeneFAM170B
Homology/Alignments : Family Browser (UCSC)FAM170B
Gene fusions - Rearrangements
Fusion : QuiverFAM170B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM170B [hg38]
dbVarFAM170B
ClinVarFAM170B
MonarchFAM170B
1000_GenomesFAM170B 
Exome Variant ServerFAM170B
GNOMAD BrowserENSG00000172538
Varsome BrowserFAM170B
Genomic Variants (DGV)FAM170B [DGVbeta]
DECIPHERFAM170B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM170B 
Mutations
ICGC Data PortalFAM170B 
TCGA Data PortalFAM170B 
Broad Tumor PortalFAM170B
OASIS PortalFAM170B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM170B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM170B
Mutations and Diseases : HGMDFAM170B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM170B
DgiDB (Drug Gene Interaction Database)FAM170B
DoCM (Curated mutations)FAM170B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM170B (select a term)
intoGenFAM170B
Cancer3DFAM170B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM170B
MedgenFAM170B
Genetic Testing Registry FAM170B
NextProtA6NMN3 [Medical]
GENETestsFAM170B
Target ValidationFAM170B
Huge Navigator FAM170B [HugePedia]
ClinGenFAM170B
Clinical trials, drugs, therapy
MyCancerGenomeFAM170B
Protein Interactions : CTD
Pharm GKB GenePA162387168
Clinical trialFAM170B
Miscellaneous
canSAR (ICR)FAM170B (select the gene name)
HarmonizomeFAM170B
DataMed IndexFAM170B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM170B
EVEXFAM170B
GoPubMedFAM170B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:53:40 CET 2020
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