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FAM171A1 (family with sequence similarity 171 member A1)

Identity

Alias_namesC10orf38
chromosome 10 open reading frame 38
family with sequence similarity 171, member A1
Alias_symbol (synonym)FLJ12884
Other alias
HGNC (Hugo) FAM171A1
LocusID (NCBI) 221061
Atlas_Id 63069
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15211645 and ends at 15371059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM171A1 (10p13) / ANKRD26 (10p12.1)LOC100507412 (-) / FAM171A1 (10p13)ZGPAT (20q13.33) / FAM171A1 (10p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM171A1   23522
Cards
Entrez_Gene (NCBI)FAM171A1  221061  family with sequence similarity 171 member A1
AliasesC10orf38
GeneCards (Weizmann)FAM171A1
Ensembl hg19 (Hinxton)ENSG00000148468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148468 [Gene_View]  chr10:15211645-15371059 [Contig_View]  FAM171A1 [Vega]
ICGC DataPortalENSG00000148468
TCGA cBioPortalFAM171A1
AceView (NCBI)FAM171A1
Genatlas (Paris)FAM171A1
WikiGenes221061
SOURCE (Princeton)FAM171A1
Genetics Home Reference (NIH)FAM171A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM171A1  -     chr10:15211645-15371059 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM171A1  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblFAM171A1 - 10p13 [CytoView hg19]  FAM171A1 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIFAM171A1 [Mapview hg19]  FAM171A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022946 AL050367 AY683003 BC034232 BC109302
RefSeq transcript (Entrez)NM_001010924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM171A1
Cluster EST : UnigeneHs.66762 [ NCBI ]
CGAP (NCI)Hs.66762
Alternative Splicing GalleryENSG00000148468
Gene ExpressionFAM171A1 [ NCBI-GEO ]   FAM171A1 [ EBI - ARRAY_EXPRESS ]   FAM171A1 [ SEEK ]   FAM171A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM171A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221061
GTEX Portal (Tissue expression)FAM171A1
Human Protein AtlasENSG00000148468-FAM171A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUB5
Splice isoforms : SwissVarQ5VUB5
PhosPhoSitePlusQ5VUB5
Domains : Interpro (EBI)Uncharacterised_FAM171   
Domain families : Pfam (Sanger)UPF0560 (PF10577)   
Domain families : Pfam (NCBI)pfam10577   
Conserved Domain (NCBI)FAM171A1
DMDM Disease mutations221061
Blocks (Seattle)FAM171A1
SuperfamilyQ5VUB5
Human Protein Atlas [tissue]ENSG00000148468-FAM171A1 [tissue]
Peptide AtlasQ5VUB5
HPRD18581
IPIIPI00000265   IPI00795199   IPI00514445   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUB5
IntAct (EBI)Q5VUB5
FunCoupENSG00000148468
BioGRIDFAM171A1
STRING (EMBL)FAM171A1
ZODIACFAM171A1
Ontologies - Pathways
QuickGOQ5VUB5
Ontology : AmiGOintegral component of membrane  extracellular exosome  
Ontology : EGO-EBIintegral component of membrane  extracellular exosome  
NDEx NetworkFAM171A1
Atlas of Cancer Signalling NetworkFAM171A1
Wikipedia pathwaysFAM171A1
Orthology - Evolution
OrthoDB221061
GeneTree (enSembl)ENSG00000148468
Phylogenetic Trees/Animal Genes : TreeFamFAM171A1
HOVERGENQ5VUB5
HOGENOMQ5VUB5
Homologs : HomoloGeneFAM171A1
Homology/Alignments : Family Browser (UCSC)FAM171A1
Gene fusions - Rearrangements
Tumor Fusion PortalFAM171A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM171A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM171A1
dbVarFAM171A1
ClinVarFAM171A1
1000_GenomesFAM171A1 
Exome Variant ServerFAM171A1
ExAC (Exome Aggregation Consortium)ENSG00000148468
GNOMAD BrowserENSG00000148468
Genetic variants : HAPMAP221061
Genomic Variants (DGV)FAM171A1 [DGVbeta]
DECIPHERFAM171A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM171A1 
Mutations
ICGC Data PortalFAM171A1 
TCGA Data PortalFAM171A1 
Broad Tumor PortalFAM171A1
OASIS PortalFAM171A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM171A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM171A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM171A1
DgiDB (Drug Gene Interaction Database)FAM171A1
DoCM (Curated mutations)FAM171A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM171A1 (select a term)
intoGenFAM171A1
Cancer3DFAM171A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM171A1
MedgenFAM171A1
Genetic Testing Registry FAM171A1
NextProtQ5VUB5 [Medical]
TSGene221061
GENETestsFAM171A1
Target ValidationFAM171A1
Huge Navigator FAM171A1 [HugePedia]
snp3D : Map Gene to Disease221061
BioCentury BCIQFAM171A1
ClinGenFAM171A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221061
Chemical/Pharm GKB GenePA162387176
Clinical trialFAM171A1
Miscellaneous
canSAR (ICR)FAM171A1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM171A1
EVEXFAM171A1
GoPubMedFAM171A1
iHOPFAM171A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:32 CET 2017

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