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FAM171A2 (family with sequence similarity 171 member A2)

Identity

Alias_namesfamily with sequence similarity 171
Alias_symbol (synonym)MGC34829
Other alias-
HGNC (Hugo) FAM171A2
LocusID (NCBI) 284069
Atlas_Id 54303
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44353733 and ends at 44363867 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATXN7L3 (17q21.31) / FAM171A2 (17q21.31)FAM171A2 (17q21.31) / MYL4 (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM171A2   30480
Cards
Entrez_Gene (NCBI)FAM171A2  284069  family with sequence similarity 171 member A2
Aliases
GeneCards (Weizmann)FAM171A2
Ensembl hg19 (Hinxton)ENSG00000161682 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161682 [Gene_View]  chr17:44353733-44363867 [Contig_View]  FAM171A2 [Vega]
ICGC DataPortalENSG00000161682
TCGA cBioPortalFAM171A2
AceView (NCBI)FAM171A2
Genatlas (Paris)FAM171A2
WikiGenes284069
SOURCE (Princeton)FAM171A2
Genetics Home Reference (NIH)FAM171A2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM171A2  -     chr17:44353733-44363867 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM171A2  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblFAM171A2 - 17q21.31 [CytoView hg19]  FAM171A2 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIFAM171A2 [Mapview hg19]  FAM171A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029298 BC030200
RefSeq transcript (Entrez)NM_198475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM171A2
Cluster EST : UnigeneHs.154001 [ NCBI ]
CGAP (NCI)Hs.154001
Alternative Splicing GalleryENSG00000161682
Gene ExpressionFAM171A2 [ NCBI-GEO ]   FAM171A2 [ EBI - ARRAY_EXPRESS ]   FAM171A2 [ SEEK ]   FAM171A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM171A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284069
GTEX Portal (Tissue expression)FAM171A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MVW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MVW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MVW0
Splice isoforms : SwissVarA8MVW0
PhosPhoSitePlusA8MVW0
Domains : Interpro (EBI)Uncharacterised_FAM171   
Domain families : Pfam (Sanger)UPF0560 (PF10577)   
Domain families : Pfam (NCBI)pfam10577   
Conserved Domain (NCBI)FAM171A2
DMDM Disease mutations284069
Blocks (Seattle)FAM171A2
SuperfamilyA8MVW0
Human Protein AtlasENSG00000161682
Peptide AtlasA8MVW0
IPIIPI00921205   IPI00166068   
Protein Interaction databases
DIP (DOE-UCLA)A8MVW0
IntAct (EBI)A8MVW0
FunCoupENSG00000161682
BioGRIDFAM171A2
STRING (EMBL)FAM171A2
ZODIACFAM171A2
Ontologies - Pathways
QuickGOA8MVW0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM171A2
Atlas of Cancer Signalling NetworkFAM171A2
Wikipedia pathwaysFAM171A2
Orthology - Evolution
OrthoDB284069
GeneTree (enSembl)ENSG00000161682
Phylogenetic Trees/Animal Genes : TreeFamFAM171A2
HOVERGENA8MVW0
HOGENOMA8MVW0
Homologs : HomoloGeneFAM171A2
Homology/Alignments : Family Browser (UCSC)FAM171A2
Gene fusions - Rearrangements
Fusion : MitelmanATXN7L3/FAM171A2 [17q21.31/17q21.31]  [t(17;17)(q21;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM171A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM171A2
dbVarFAM171A2
ClinVarFAM171A2
1000_GenomesFAM171A2 
Exome Variant ServerFAM171A2
ExAC (Exome Aggregation Consortium)FAM171A2 (select the gene name)
Genetic variants : HAPMAP284069
Genomic Variants (DGV)FAM171A2 [DGVbeta]
DECIPHERFAM171A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM171A2 
Mutations
ICGC Data PortalFAM171A2 
TCGA Data PortalFAM171A2 
Broad Tumor PortalFAM171A2
OASIS PortalFAM171A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM171A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM171A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM171A2
DgiDB (Drug Gene Interaction Database)FAM171A2
DoCM (Curated mutations)FAM171A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM171A2 (select a term)
intoGenFAM171A2
Cancer3DFAM171A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM171A2
Genetic Testing Registry FAM171A2
NextProtA8MVW0 [Medical]
TSGene284069
GENETestsFAM171A2
Target ValidationFAM171A2
Huge Navigator FAM171A2 [HugePedia]
snp3D : Map Gene to Disease284069
BioCentury BCIQFAM171A2
ClinGenFAM171A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284069
Chemical/Pharm GKB GenePA162387197
Clinical trialFAM171A2
Miscellaneous
canSAR (ICR)FAM171A2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM171A2
EVEXFAM171A2
GoPubMedFAM171A2
iHOPFAM171A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:33:17 CEST 2017

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