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FAM171B (family with sequence similarity 171 member B)

Identity

Alias_namesKIAA1946
KIAA1946
family with sequence similarity 171, member B
Alias_symbol (synonym)FLJ34104
Other alias
HGNC (Hugo) FAM171B
LocusID (NCBI) 165215
Atlas_Id 63070
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 186694062 and ends at 186763785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM171B (2q32.1) / FAM171B (2q32.1)ITPRIP (10q25.1) / FAM171B (2q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM171B   29412
Cards
Entrez_Gene (NCBI)FAM171B  165215  family with sequence similarity 171 member B
AliasesKIAA1946
GeneCards (Weizmann)FAM171B
Ensembl hg19 (Hinxton)ENSG00000144369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144369 [Gene_View]  chr2:186694062-186763785 [Contig_View]  FAM171B [Vega]
ICGC DataPortalENSG00000144369
TCGA cBioPortalFAM171B
AceView (NCBI)FAM171B
Genatlas (Paris)FAM171B
WikiGenes165215
SOURCE (Princeton)FAM171B
Genetics Home Reference (NIH)FAM171B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM171B  -     chr2:186694062-186763785 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM171B  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblFAM171B - 2q32.1 [CytoView hg19]  FAM171B - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIFAM171B [Mapview hg19]  FAM171B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075826 AF361495 AK091423 AK094578 AK095604
RefSeq transcript (Entrez)NM_177454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM171B
Cluster EST : UnigeneHs.28872 [ NCBI ]
CGAP (NCI)Hs.28872
Alternative Splicing GalleryENSG00000144369
Gene ExpressionFAM171B [ NCBI-GEO ]   FAM171B [ EBI - ARRAY_EXPRESS ]   FAM171B [ SEEK ]   FAM171B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM171B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165215
GTEX Portal (Tissue expression)FAM171B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P995   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P995  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P995
Splice isoforms : SwissVarQ6P995
PhosPhoSitePlusQ6P995
Domains : Interpro (EBI)Uncharacterised_FAM171   
Domain families : Pfam (Sanger)UPF0560 (PF10577)   
Domain families : Pfam (NCBI)pfam10577   
Conserved Domain (NCBI)FAM171B
DMDM Disease mutations165215
Blocks (Seattle)FAM171B
SuperfamilyQ6P995
Human Protein AtlasENSG00000144369
Peptide AtlasQ6P995
HPRD13907
IPIIPI00396166   IPI00845399   
Protein Interaction databases
DIP (DOE-UCLA)Q6P995
IntAct (EBI)Q6P995
FunCoupENSG00000144369
BioGRIDFAM171B
STRING (EMBL)FAM171B
ZODIACFAM171B
Ontologies - Pathways
QuickGOQ6P995
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM171B
Atlas of Cancer Signalling NetworkFAM171B
Wikipedia pathwaysFAM171B
Orthology - Evolution
OrthoDB165215
GeneTree (enSembl)ENSG00000144369
Phylogenetic Trees/Animal Genes : TreeFamFAM171B
HOVERGENQ6P995
HOGENOMQ6P995
Homologs : HomoloGeneFAM171B
Homology/Alignments : Family Browser (UCSC)FAM171B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM171B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM171B
dbVarFAM171B
ClinVarFAM171B
1000_GenomesFAM171B 
Exome Variant ServerFAM171B
ExAC (Exome Aggregation Consortium)FAM171B (select the gene name)
Genetic variants : HAPMAP165215
Genomic Variants (DGV)FAM171B [DGVbeta]
DECIPHERFAM171B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM171B 
Mutations
ICGC Data PortalFAM171B 
TCGA Data PortalFAM171B 
Broad Tumor PortalFAM171B
OASIS PortalFAM171B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM171B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM171B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM171B
DgiDB (Drug Gene Interaction Database)FAM171B
DoCM (Curated mutations)FAM171B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM171B (select a term)
intoGenFAM171B
Cancer3DFAM171B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM171B
Genetic Testing Registry FAM171B
NextProtQ6P995 [Medical]
TSGene165215
GENETestsFAM171B
Target ValidationFAM171B
Huge Navigator FAM171B [HugePedia]
snp3D : Map Gene to Disease165215
BioCentury BCIQFAM171B
ClinGenFAM171B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165215
Chemical/Pharm GKB GenePA162387220
Clinical trialFAM171B
Miscellaneous
canSAR (ICR)FAM171B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM171B
EVEXFAM171B
GoPubMedFAM171B
iHOPFAM171B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:42 CEST 2017

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