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FAM172BP (family with sequence similarity 172 member B, pseudogene)

Identity

Alias_namesFAM172B
family with sequence similarity 172, member B pseudogene
family with sequence similarity 172, member B, pseudogene
Alias_symbol (synonym)LOC131909
FLJ45679
Other alias
HGNC (Hugo) FAM172BP
LocusID (NCBI) 131909
Atlas_Id 63071
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101518867 and ends at 101523887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM172BP   34336
Cards
Entrez_Gene (NCBI)FAM172BP  131909  family with sequence similarity 172 member B, pseudogene
AliasesFAM172B
GeneCards (Weizmann)FAM172BP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:101518867-101523887 [Contig_View]  FAM172BP [Vega]
TCGA cBioPortalFAM172BP
AceView (NCBI)FAM172BP
Genatlas (Paris)FAM172BP
WikiGenes131909
SOURCE (Princeton)FAM172BP
Genetics Home Reference (NIH)FAM172BP
Genomic and cartography
GoldenPath hg38 (UCSC)FAM172BP  -     chr3:101518867-101523887 +  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM172BP  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblFAM172BP - 3q12.3 [CytoView hg19]  FAM172BP - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBIFAM172BP [Mapview hg19]  FAM172BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127584 EG328077
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM172BP
Cluster EST : UnigeneHs.518125 [ NCBI ]
CGAP (NCI)Hs.518125
Gene ExpressionFAM172BP [ NCBI-GEO ]   FAM172BP [ EBI - ARRAY_EXPRESS ]   FAM172BP [ SEEK ]   FAM172BP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM172BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131909
GTEX Portal (Tissue expression)FAM172BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC97
Splice isoforms : SwissVarA6NC97
PhosPhoSitePlusA6NC97
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM172BP
DMDM Disease mutations131909
Blocks (Seattle)FAM172BP
SuperfamilyA6NC97
Peptide AtlasA6NC97
IPIIPI00057620   
Protein Interaction databases
DIP (DOE-UCLA)A6NC97
IntAct (EBI)A6NC97
BioGRIDFAM172BP
STRING (EMBL)FAM172BP
ZODIACFAM172BP
Ontologies - Pathways
QuickGOA6NC97
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM172BP
Atlas of Cancer Signalling NetworkFAM172BP
Wikipedia pathwaysFAM172BP
Orthology - Evolution
OrthoDB131909
Phylogenetic Trees/Animal Genes : TreeFamFAM172BP
HOVERGENA6NC97
HOGENOMA6NC97
Homologs : HomoloGeneFAM172BP
Homology/Alignments : Family Browser (UCSC)FAM172BP
Gene fusions - Rearrangements
Tumor Fusion PortalFAM172BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM172BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM172BP
dbVarFAM172BP
ClinVarFAM172BP
1000_GenomesFAM172BP 
Exome Variant ServerFAM172BP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP131909
Genomic Variants (DGV)FAM172BP [DGVbeta]
DECIPHERFAM172BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM172BP 
Mutations
ICGC Data PortalFAM172BP 
TCGA Data PortalFAM172BP 
Broad Tumor PortalFAM172BP
OASIS PortalFAM172BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM172BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM172BP
DgiDB (Drug Gene Interaction Database)FAM172BP
DoCM (Curated mutations)FAM172BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM172BP (select a term)
intoGenFAM172BP
Cancer3DFAM172BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM172BP
MedgenFAM172BP
Genetic Testing Registry FAM172BP
NextProtA6NC97 [Medical]
TSGene131909
GENETestsFAM172BP
Target ValidationFAM172BP
Huge Navigator FAM172BP [HugePedia]
snp3D : Map Gene to Disease131909
BioCentury BCIQFAM172BP
ClinGenFAM172BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131909
Clinical trialFAM172BP
Miscellaneous
canSAR (ICR)FAM172BP (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM172BP
EVEXFAM172BP
GoPubMedFAM172BP
iHOPFAM172BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:25 CET 2017

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