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FAM173A (family with sequence similarity 173 member A)

Identity

Alias_namesC16orf24
chromosome 16 open reading frame 24
family with sequence similarity 173, member A
Alias_symbol (synonym)MGC2494
Other alias
HGNC (Hugo) FAM173A
LocusID (NCBI) 65990
Atlas_Id 63072
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 721142 and ends at 722590 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM173A   14152
Cards
Entrez_Gene (NCBI)FAM173A  65990  family with sequence similarity 173 member A
AliasesC16orf24
GeneCards (Weizmann)FAM173A
Ensembl hg19 (Hinxton)ENSG00000103254 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103254 [Gene_View]  chr16:721142-722590 [Contig_View]  FAM173A [Vega]
ICGC DataPortalENSG00000103254
TCGA cBioPortalFAM173A
AceView (NCBI)FAM173A
Genatlas (Paris)FAM173A
WikiGenes65990
SOURCE (Princeton)FAM173A
Genetics Home Reference (NIH)FAM173A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM173A  -     chr16:721142-722590 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM173A  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM173A - 16p13.3 [CytoView hg19]  FAM173A - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM173A [Mapview hg19]  FAM173A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI492179 AK123186 BC001181 BC002624 BI597021
RefSeq transcript (Entrez)NM_001271285 NM_023933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM173A
Cluster EST : UnigeneHs.166244 [ NCBI ]
CGAP (NCI)Hs.166244
Alternative Splicing GalleryENSG00000103254
Gene ExpressionFAM173A [ NCBI-GEO ]   FAM173A [ EBI - ARRAY_EXPRESS ]   FAM173A [ SEEK ]   FAM173A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM173A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65990
GTEX Portal (Tissue expression)FAM173A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQD7
Splice isoforms : SwissVarQ9BQD7
PhosPhoSitePlusQ9BQD7
Domains : Interpro (EBI)SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM173A
DMDM Disease mutations65990
Blocks (Seattle)FAM173A
SuperfamilyQ9BQD7
Human Protein AtlasENSG00000103254
Peptide AtlasQ9BQD7
HPRD14500
IPIIPI00028383   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQD7
IntAct (EBI)Q9BQD7
FunCoupENSG00000103254
BioGRIDFAM173A
STRING (EMBL)FAM173A
ZODIACFAM173A
Ontologies - Pathways
QuickGOQ9BQD7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM173A
Atlas of Cancer Signalling NetworkFAM173A
Wikipedia pathwaysFAM173A
Orthology - Evolution
OrthoDB65990
GeneTree (enSembl)ENSG00000103254
Phylogenetic Trees/Animal Genes : TreeFamFAM173A
HOVERGENQ9BQD7
HOGENOMQ9BQD7
Homologs : HomoloGeneFAM173A
Homology/Alignments : Family Browser (UCSC)FAM173A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM173A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM173A
dbVarFAM173A
ClinVarFAM173A
1000_GenomesFAM173A 
Exome Variant ServerFAM173A
ExAC (Exome Aggregation Consortium)FAM173A (select the gene name)
Genetic variants : HAPMAP65990
Genomic Variants (DGV)FAM173A [DGVbeta]
DECIPHERFAM173A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM173A 
Mutations
ICGC Data PortalFAM173A 
TCGA Data PortalFAM173A 
Broad Tumor PortalFAM173A
OASIS PortalFAM173A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM173A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM173A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM173A
DgiDB (Drug Gene Interaction Database)FAM173A
DoCM (Curated mutations)FAM173A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM173A (select a term)
intoGenFAM173A
Cancer3DFAM173A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM173A
Genetic Testing Registry FAM173A
NextProtQ9BQD7 [Medical]
TSGene65990
GENETestsFAM173A
Target ValidationFAM173A
Huge Navigator FAM173A [HugePedia]
snp3D : Map Gene to Disease65990
BioCentury BCIQFAM173A
ClinGenFAM173A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65990
Chemical/Pharm GKB GenePA162387266
Clinical trialFAM173A
Miscellaneous
canSAR (ICR)FAM173A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM173A
EVEXFAM173A
GoPubMedFAM173A
iHOPFAM173A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:42 CEST 2017

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