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FAM173B (family with sequence similarity 173 member B)

Identity

Alias_namesfamily with sequence similarity 173
Other aliasJS-2
HGNC (Hugo) FAM173B
LocusID (NCBI) 134145
Atlas_Id 52709
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10225620 and ends at 10250021 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM173B   27029
Cards
Entrez_Gene (NCBI)FAM173B  134145  family with sequence similarity 173 member B
AliasesJS-2
GeneCards (Weizmann)FAM173B
Ensembl hg19 (Hinxton)ENSG00000150756 [Gene_View]  chr5:10225620-10250021 [Contig_View]  FAM173B [Vega]
Ensembl hg38 (Hinxton)ENSG00000150756 [Gene_View]  chr5:10225620-10250021 [Contig_View]  FAM173B [Vega]
ICGC DataPortalENSG00000150756
TCGA cBioPortalFAM173B
AceView (NCBI)FAM173B
Genatlas (Paris)FAM173B
WikiGenes134145
SOURCE (Princeton)FAM173B
Genetics Home Reference (NIH)FAM173B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM173B  -     chr5:10225620-10250021 -  5p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM173B  -     5p15.2   [Description]    (hg38-Dec_2013)
EnsemblFAM173B - 5p15.2 [CytoView hg19]  FAM173B - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBIFAM173B [Mapview hg19]  FAM173B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA856750 AK000674 AK055604 AK123462 AK300042
RefSeq transcript (Entrez)NM_001258388 NM_001258389 NM_199133
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)FAM173B
Cluster EST : UnigeneHs.481569 [ NCBI ]
CGAP (NCI)Hs.481569
Alternative Splicing GalleryENSG00000150756
Gene ExpressionFAM173B [ NCBI-GEO ]   FAM173B [ EBI - ARRAY_EXPRESS ]   FAM173B [ SEEK ]   FAM173B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM173B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134145
GTEX Portal (Tissue expression)FAM173B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4H8
Splice isoforms : SwissVarQ6P4H8
PhosPhoSitePlusQ6P4H8
Domains : Interpro (EBI)FAM173    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM173B
DMDM Disease mutations134145
Blocks (Seattle)FAM173B
SuperfamilyQ6P4H8
Human Protein AtlasENSG00000150756
Peptide AtlasQ6P4H8
HPRD14054
IPIIPI00395800   IPI00967910   IPI00967361   IPI00968143   IPI00964197   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4H8
IntAct (EBI)Q6P4H8
FunCoupENSG00000150756
BioGRIDFAM173B
STRING (EMBL)FAM173B
ZODIACFAM173B
Ontologies - Pathways
QuickGOQ6P4H8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM173B
Atlas of Cancer Signalling NetworkFAM173B
Wikipedia pathwaysFAM173B
Orthology - Evolution
OrthoDB134145
GeneTree (enSembl)ENSG00000150756
Phylogenetic Trees/Animal Genes : TreeFamFAM173B
HOVERGENQ6P4H8
HOGENOMQ6P4H8
Homologs : HomoloGeneFAM173B
Homology/Alignments : Family Browser (UCSC)FAM173B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM173B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM173B
dbVarFAM173B
ClinVarFAM173B
1000_GenomesFAM173B 
Exome Variant ServerFAM173B
ExAC (Exome Aggregation Consortium)FAM173B (select the gene name)
Genetic variants : HAPMAP134145
Genomic Variants (DGV)FAM173B [DGVbeta]
DECIPHER (Syndromes)5:10225620-10250021  ENSG00000150756
CONAN: Copy Number AnalysisFAM173B 
Mutations
ICGC Data PortalFAM173B 
TCGA Data PortalFAM173B 
Broad Tumor PortalFAM173B
OASIS PortalFAM173B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM173B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM173B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM173B
DgiDB (Drug Gene Interaction Database)FAM173B
DoCM (Curated mutations)FAM173B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM173B (select a term)
intoGenFAM173B
Cancer3DFAM173B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM173B
Genetic Testing Registry FAM173B
NextProtQ6P4H8 [Medical]
TSGene134145
GENETestsFAM173B
Huge Navigator FAM173B [HugePedia]
snp3D : Map Gene to Disease134145
BioCentury BCIQFAM173B
ClinGenFAM173B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134145
Chemical/Pharm GKB GenePA162387281
Clinical trialFAM173B
Miscellaneous
canSAR (ICR)FAM173B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM173B
EVEXFAM173B
GoPubMedFAM173B
iHOPFAM173B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:27 CET 2017

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