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FAM174B (family with sequence similarity 174 member B)

Identity

Alias_namesfamily with sequence similarity 174, member B
Alias_symbol (synonym)LOC400451
MGC102891
Other alias-
HGNC (Hugo) FAM174B
LocusID (NCBI) 400451
Atlas_Id 63074
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 92617449 and ends at 92655801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRPF8 (17p13.3) / FAM174B (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM174B   34339
Cards
Entrez_Gene (NCBI)FAM174B  400451  family with sequence similarity 174 member B
Aliases
GeneCards (Weizmann)FAM174B
Ensembl hg19 (Hinxton)ENSG00000185442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185442 [Gene_View]  chr15:92617449-92655801 [Contig_View]  FAM174B [Vega]
ICGC DataPortalENSG00000185442
TCGA cBioPortalFAM174B
AceView (NCBI)FAM174B
Genatlas (Paris)FAM174B
WikiGenes400451
SOURCE (Princeton)FAM174B
Genetics Home Reference (NIH)FAM174B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM174B  -     chr15:92617449-92655801 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM174B  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblFAM174B - 15q26.1 [CytoView hg19]  FAM174B - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIFAM174B [Mapview hg19]  FAM174B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075564 AL110139 AL110289 BC031970 BC045729
RefSeq transcript (Entrez)NM_207446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM174B
Cluster EST : UnigeneHs.702316 [ NCBI ]
CGAP (NCI)Hs.702316
Alternative Splicing GalleryENSG00000185442
Gene ExpressionFAM174B [ NCBI-GEO ]   FAM174B [ EBI - ARRAY_EXPRESS ]   FAM174B [ SEEK ]   FAM174B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM174B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400451
GTEX Portal (Tissue expression)FAM174B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCQ3
Splice isoforms : SwissVarQ3ZCQ3
PhosPhoSitePlusQ3ZCQ3
Domains : Interpro (EBI)DUF1180   
Domain families : Pfam (Sanger)DUF1180 (PF06679)   
Domain families : Pfam (NCBI)pfam06679   
Conserved Domain (NCBI)FAM174B
DMDM Disease mutations400451
Blocks (Seattle)FAM174B
SuperfamilyQ3ZCQ3
Human Protein AtlasENSG00000185442
Peptide AtlasQ3ZCQ3
HPRD14220
IPIIPI00168255   IPI01025633   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCQ3
IntAct (EBI)Q3ZCQ3
FunCoupENSG00000185442
BioGRIDFAM174B
STRING (EMBL)FAM174B
ZODIACFAM174B
Ontologies - Pathways
QuickGOQ3ZCQ3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM174B
Atlas of Cancer Signalling NetworkFAM174B
Wikipedia pathwaysFAM174B
Orthology - Evolution
OrthoDB400451
GeneTree (enSembl)ENSG00000185442
Phylogenetic Trees/Animal Genes : TreeFamFAM174B
HOVERGENQ3ZCQ3
HOGENOMQ3ZCQ3
Homologs : HomoloGeneFAM174B
Homology/Alignments : Family Browser (UCSC)FAM174B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM174B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM174B
dbVarFAM174B
ClinVarFAM174B
1000_GenomesFAM174B 
Exome Variant ServerFAM174B
ExAC (Exome Aggregation Consortium)FAM174B (select the gene name)
Genetic variants : HAPMAP400451
Genomic Variants (DGV)FAM174B [DGVbeta]
DECIPHERFAM174B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM174B 
Mutations
ICGC Data PortalFAM174B 
TCGA Data PortalFAM174B 
Broad Tumor PortalFAM174B
OASIS PortalFAM174B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM174B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM174B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM174B
DgiDB (Drug Gene Interaction Database)FAM174B
DoCM (Curated mutations)FAM174B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM174B (select a term)
intoGenFAM174B
Cancer3DFAM174B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM174B
Genetic Testing Registry FAM174B
NextProtQ3ZCQ3 [Medical]
TSGene400451
GENETestsFAM174B
Target ValidationFAM174B
Huge Navigator FAM174B [HugePedia]
snp3D : Map Gene to Disease400451
BioCentury BCIQFAM174B
ClinGenFAM174B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400451
Chemical/Pharm GKB GenePA162387297
Clinical trialFAM174B
Miscellaneous
canSAR (ICR)FAM174B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM174B
EVEXFAM174B
GoPubMedFAM174B
iHOPFAM174B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:48:00 CEST 2017

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