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FAM175B (family with sequence similarity 175 member B)

Identity

Alias_namesKIAA0157
KIAA0157
family with sequence similarity 175, member B
Alias_symbol (synonym)Em:AC068896.4
ABRO1
Other alias
HGNC (Hugo) FAM175B
LocusID (NCBI) 23172
Atlas_Id 55573
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 126490354 and ends at 126525239 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM175B   28975
Cards
Entrez_Gene (NCBI)FAM175B  23172  family with sequence similarity 175 member B
AliasesABRO1; KIAA0157
GeneCards (Weizmann)FAM175B
Ensembl hg19 (Hinxton)ENSG00000165660 [Gene_View]  chr10:126490354-126525239 [Contig_View]  FAM175B [Vega]
Ensembl hg38 (Hinxton)ENSG00000165660 [Gene_View]  chr10:126490354-126525239 [Contig_View]  FAM175B [Vega]
ICGC DataPortalENSG00000165660
TCGA cBioPortalFAM175B
AceView (NCBI)FAM175B
Genatlas (Paris)FAM175B
WikiGenes23172
SOURCE (Princeton)FAM175B
Genetics Home Reference (NIH)FAM175B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM175B  -     chr10:126490354-126525239 +  10q26.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM175B  -     10q26.13   [Description]    (hg38-Dec_2013)
EnsemblFAM175B - 10q26.13 [CytoView hg19]  FAM175B - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIFAM175B [Mapview hg19]  FAM175B [Mapview hg38]
OMIM611144   
Gene and transcription
Genbank (Entrez)AK025991 AK296677 AL537809 BC008999 BQ000004
RefSeq transcript (Entrez)NM_032182
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)FAM175B
Cluster EST : UnigeneHs.280695 [ NCBI ]
CGAP (NCI)Hs.280695
Alternative Splicing GalleryENSG00000165660
Gene ExpressionFAM175B [ NCBI-GEO ]   FAM175B [ EBI - ARRAY_EXPRESS ]   FAM175B [ SEEK ]   FAM175B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM175B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23172
GTEX Portal (Tissue expression)FAM175B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15018   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15018  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15018
Splice isoforms : SwissVarQ15018
PhosPhoSitePlusQ15018
Domains : Interpro (EBI)FAM175    FAM175_BRISC_cplx_Abro1_su   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM175B
DMDM Disease mutations23172
Blocks (Seattle)FAM175B
SuperfamilyQ15018
Human Protein AtlasENSG00000165660
Peptide AtlasQ15018
HPRD13783
IPIIPI00299517   
Protein Interaction databases
DIP (DOE-UCLA)Q15018
IntAct (EBI)Q15018
FunCoupENSG00000165660
BioGRIDFAM175B
STRING (EMBL)FAM175B
ZODIACFAM175B
Ontologies - Pathways
QuickGOQ15018
Ontology : AmiGOmitotic cell cycle  response to ischemia  cytoplasm  centrosome  chromosome segregation  microtubule binding  attachment of spindle microtubules to kinetochore  midbody  polyubiquitin binding  spindle pole centrosome  microtubule minus-end  cell division  protein K63-linked deubiquitination  BRISC complex  mitotic spindle assembly  
Ontology : EGO-EBImitotic cell cycle  response to ischemia  cytoplasm  centrosome  chromosome segregation  microtubule binding  attachment of spindle microtubules to kinetochore  midbody  polyubiquitin binding  spindle pole centrosome  microtubule minus-end  cell division  protein K63-linked deubiquitination  BRISC complex  mitotic spindle assembly  
NDEx NetworkFAM175B
Atlas of Cancer Signalling NetworkFAM175B
Wikipedia pathwaysFAM175B
Orthology - Evolution
OrthoDB23172
GeneTree (enSembl)ENSG00000165660
Phylogenetic Trees/Animal Genes : TreeFamFAM175B
HOVERGENQ15018
HOGENOMQ15018
Homologs : HomoloGeneFAM175B
Homology/Alignments : Family Browser (UCSC)FAM175B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM175B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM175B
dbVarFAM175B
ClinVarFAM175B
1000_GenomesFAM175B 
Exome Variant ServerFAM175B
ExAC (Exome Aggregation Consortium)FAM175B (select the gene name)
Genetic variants : HAPMAP23172
Genomic Variants (DGV)FAM175B [DGVbeta]
DECIPHER (Syndromes)10:126490354-126525239  ENSG00000165660
CONAN: Copy Number AnalysisFAM175B 
Mutations
ICGC Data PortalFAM175B 
TCGA Data PortalFAM175B 
Broad Tumor PortalFAM175B
OASIS PortalFAM175B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM175B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM175B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM175B
DgiDB (Drug Gene Interaction Database)FAM175B
DoCM (Curated mutations)FAM175B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM175B (select a term)
intoGenFAM175B
Cancer3DFAM175B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611144   
Orphanet
MedgenFAM175B
Genetic Testing Registry FAM175B
NextProtQ15018 [Medical]
TSGene23172
GENETestsFAM175B
Huge Navigator FAM175B [HugePedia]
snp3D : Map Gene to Disease23172
BioCentury BCIQFAM175B
ClinGenFAM175B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23172
Chemical/Pharm GKB GenePA162387331
Clinical trialFAM175B
Miscellaneous
canSAR (ICR)FAM175B (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM175B
EVEXFAM175B
GoPubMedFAM175B
iHOPFAM175B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:43 CEST 2017

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