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FAM177B (family with sequence similarity 177 member B)

Identity

Alias_namesfamily with sequence similarity 177, member B
Alias_symbol (synonym)RP11-452F19.2
FLJ43505
Other alias-
HGNC (Hugo) FAM177B
LocusID (NCBI) 400823
Atlas_Id 63077
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 222739684 and ends at 222750805 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM177B   34395
Cards
Entrez_Gene (NCBI)FAM177B  400823  family with sequence similarity 177 member B
Aliases
GeneCards (Weizmann)FAM177B
Ensembl hg19 (Hinxton)ENSG00000197520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197520 [Gene_View]  chr1:222739684-222750805 [Contig_View]  FAM177B [Vega]
ICGC DataPortalENSG00000197520
TCGA cBioPortalFAM177B
AceView (NCBI)FAM177B
Genatlas (Paris)FAM177B
WikiGenes400823
SOURCE (Princeton)FAM177B
Genetics Home Reference (NIH)FAM177B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM177B  -     chr1:222739684-222750805 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM177B  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblFAM177B - 1q41 [CytoView hg19]  FAM177B - 1q41 [CytoView hg38]
Mapping of homologs : NCBIFAM177B [Mapview hg19]  FAM177B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125494 CA848039
RefSeq transcript (Entrez)NM_001324080 NM_207468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM177B
Cluster EST : UnigeneHs.697608 [ NCBI ]
CGAP (NCI)Hs.697608
Alternative Splicing GalleryENSG00000197520
Gene ExpressionFAM177B [ NCBI-GEO ]   FAM177B [ EBI - ARRAY_EXPRESS ]   FAM177B [ SEEK ]   FAM177B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM177B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400823
GTEX Portal (Tissue expression)FAM177B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6PVY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6PVY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6PVY3
Splice isoforms : SwissVarA6PVY3
PhosPhoSitePlusA6PVY3
Domains : Interpro (EBI)FAM177   
Domain families : Pfam (Sanger)FAM177 (PF14774)   
Domain families : Pfam (NCBI)pfam14774   
Conserved Domain (NCBI)FAM177B
DMDM Disease mutations400823
Blocks (Seattle)FAM177B
SuperfamilyA6PVY3
Human Protein AtlasENSG00000197520
Peptide AtlasA6PVY3
HPRD16965
IPIIPI00402098   IPI00853063   IPI00852647   IPI00852776   
Protein Interaction databases
DIP (DOE-UCLA)A6PVY3
IntAct (EBI)A6PVY3
FunCoupENSG00000197520
BioGRIDFAM177B
STRING (EMBL)FAM177B
ZODIACFAM177B
Ontologies - Pathways
QuickGOA6PVY3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM177B
Atlas of Cancer Signalling NetworkFAM177B
Wikipedia pathwaysFAM177B
Orthology - Evolution
OrthoDB400823
GeneTree (enSembl)ENSG00000197520
Phylogenetic Trees/Animal Genes : TreeFamFAM177B
HOVERGENA6PVY3
HOGENOMA6PVY3
Homologs : HomoloGeneFAM177B
Homology/Alignments : Family Browser (UCSC)FAM177B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM177B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM177B
dbVarFAM177B
ClinVarFAM177B
1000_GenomesFAM177B 
Exome Variant ServerFAM177B
ExAC (Exome Aggregation Consortium)FAM177B (select the gene name)
Genetic variants : HAPMAP400823
Genomic Variants (DGV)FAM177B [DGVbeta]
DECIPHERFAM177B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM177B 
Mutations
ICGC Data PortalFAM177B 
TCGA Data PortalFAM177B 
Broad Tumor PortalFAM177B
OASIS PortalFAM177B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM177B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM177B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM177B
DgiDB (Drug Gene Interaction Database)FAM177B
DoCM (Curated mutations)FAM177B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM177B (select a term)
intoGenFAM177B
Cancer3DFAM177B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM177B
Genetic Testing Registry FAM177B
NextProtA6PVY3 [Medical]
TSGene400823
GENETestsFAM177B
Target ValidationFAM177B
Huge Navigator FAM177B [HugePedia]
snp3D : Map Gene to Disease400823
BioCentury BCIQFAM177B
ClinGenFAM177B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400823
Chemical/Pharm GKB GenePA162387394
Clinical trialFAM177B
Miscellaneous
canSAR (ICR)FAM177B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM177B
EVEXFAM177B
GoPubMedFAM177B
iHOPFAM177B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:43 CEST 2017

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