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FAM178A (family with sequence similarity 178, member A)

Identity

Other aliasC10orf6
HGNC (Hugo) FAM178A
LocusID (NCBI) 55719
Atlas_Id 63078
Location 10q24.31  [Link to chromosome band 10q24]
Location_base_pair Starts at 102672326 and ends at 102719347 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM178A   17814
Cards
Entrez_Gene (NCBI)FAM178A  55719  family with sequence similarity 178, member A
AliasesC10orf6
GeneCards (Weizmann)FAM178A
Ensembl hg19 (Hinxton)ENSG00000119906 [Gene_View]  chr10:102672326-102719347 [Contig_View]  FAM178A [Vega]
Ensembl hg38 (Hinxton)ENSG00000119906 [Gene_View]  chr10:102672326-102719347 [Contig_View]  FAM178A [Vega]
ICGC DataPortalENSG00000119906
TCGA cBioPortalFAM178A
AceView (NCBI)FAM178A
Genatlas (Paris)FAM178A
WikiGenes55719
SOURCE (Princeton)FAM178A
Genetics Home Reference (NIH)FAM178A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM178A  -     chr10:102672326-102719347 +  10q24.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM178A  -     10q24.31   [Description]    (hg38-Dec_2013)
EnsemblFAM178A - 10q24.31 [CytoView hg19]  FAM178A - 10q24.31 [CytoView hg38]
Mapping of homologs : NCBIFAM178A [Mapview hg19]  FAM178A [Mapview hg38]
OMIM610348   
Gene and transcription
Genbank (Entrez)AA829402 AF460991 AF460992 AI282394 AK001374
RefSeq transcript (Entrez)NM_001136123 NM_001243770 NM_018121 NM_144592
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)FAM178A
Cluster EST : UnigeneHs.732620 [ NCBI ]
CGAP (NCI)Hs.732620
Alternative Splicing GalleryENSG00000119906
Gene ExpressionFAM178A [ NCBI-GEO ]   FAM178A [ EBI - ARRAY_EXPRESS ]   FAM178A [ SEEK ]   FAM178A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM178A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55719
GTEX Portal (Tissue expression)FAM178A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX21
Splice isoforms : SwissVarQ8IX21
PhosPhoSitePlusQ8IX21
Domains : Interpro (EBI)FAM178   
Domain families : Pfam (Sanger)FAM178 (PF14816)   
Domain families : Pfam (NCBI)pfam14816   
Conserved Domain (NCBI)FAM178A
DMDM Disease mutations55719
Blocks (Seattle)FAM178A
SuperfamilyQ8IX21
Human Protein AtlasENSG00000119906
Peptide AtlasQ8IX21
HPRD12581
IPIIPI00293188   IPI00430796   IPI00816832   IPI00980301   IPI00640126   IPI00065348   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX21
IntAct (EBI)Q8IX21
FunCoupENSG00000119906
BioGRIDFAM178A
STRING (EMBL)FAM178A
ZODIACFAM178A
Ontologies - Pathways
QuickGOQ8IX21
Ontology : AmiGOchromatin  extracellular space  nucleus  intracellular membrane-bounded organelle  
Ontology : EGO-EBIchromatin  extracellular space  nucleus  intracellular membrane-bounded organelle  
NDEx NetworkFAM178A
Atlas of Cancer Signalling NetworkFAM178A
Wikipedia pathwaysFAM178A
Orthology - Evolution
OrthoDB55719
GeneTree (enSembl)ENSG00000119906
Phylogenetic Trees/Animal Genes : TreeFamFAM178A
HOVERGENQ8IX21
HOGENOMQ8IX21
Homologs : HomoloGeneFAM178A
Homology/Alignments : Family Browser (UCSC)FAM178A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM178A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM178A
dbVarFAM178A
ClinVarFAM178A
1000_GenomesFAM178A 
Exome Variant ServerFAM178A
ExAC (Exome Aggregation Consortium)FAM178A (select the gene name)
Genetic variants : HAPMAP55719
Genomic Variants (DGV)FAM178A [DGVbeta]
DECIPHER (Syndromes)10:102672326-102719347  ENSG00000119906
CONAN: Copy Number AnalysisFAM178A 
Mutations
ICGC Data PortalFAM178A 
TCGA Data PortalFAM178A 
Broad Tumor PortalFAM178A
OASIS PortalFAM178A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM178A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM178A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM178A
DgiDB (Drug Gene Interaction Database)FAM178A
DoCM (Curated mutations)FAM178A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM178A (select a term)
intoGenFAM178A
Cancer3DFAM178A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610348   
Orphanet
MedgenFAM178A
Genetic Testing Registry FAM178A
NextProtQ8IX21 [Medical]
TSGene55719
GENETestsFAM178A
Huge Navigator FAM178A [HugePedia]
snp3D : Map Gene to Disease55719
BioCentury BCIQFAM178A
ClinGenFAM178A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55719
Chemical/Pharm GKB GenePA162387411
Clinical trialFAM178A
Miscellaneous
canSAR (ICR)FAM178A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM178A
EVEXFAM178A
GoPubMedFAM178A
iHOPFAM178A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:41 CET 2017

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