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FAM178B (family with sequence similarity 178 member B)

Identity

Alias_namesfamily with sequence similarity 178, member B
Alias_symbol (synonym)LOC51252
Other alias-
HGNC (Hugo) FAM178B
LocusID (NCBI) 51252
Atlas_Id 63079
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96875882 and ends at 96986564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD36 (2q11.2) / FAM178B (2q11.2)ANKRD39 (2q11.2) / FAM178B (2q11.2)ATAD2 (8q24.13) / FAM178B (2q11.2)
FAM178B (2q11.2) / PRRG1 (Xp21.1)FAM178B (2q11.2) / SRP68 (17q25.1)LMAN2L (2q11.2) / FAM178B (2q11.2)
SEMA4C (2q11.2) / FAM178B (2q11.2)ATAD2 FAM178BANKRD39 FAM178B
LMAN2L FAM178BSEMA4C FAM178B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

FAM178B
Nomenclature
HGNC (Hugo)FAM178B   28036
Cards
Entrez_Gene (NCBI)FAM178B  51252  family with sequence similarity 178 member B
Aliases
GeneCards (Weizmann)
Ensembl hg19 (Hinxton)ENSG00000168754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168754 [Gene_View]  chr2:96875882-96986564 [Contig_View]  FAM178B [Vega]
ICGC DataPortalENSG00000168754
TCGA cBioPortalFAM178B
AceView (NCBI)FAM178B
Genatlas (Paris)FAM178B
WikiGenes51252
SOURCE (Princeton)FAM178B
Genetics Home Reference (NIH)FAM178B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM178B  -     chr2:96875882-96986564 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM178B  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblFAM178B - 2q11.2 [CytoView hg19]  FAM178B - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM178B [Mapview hg19]  FAM178B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151068 AJ710728 AK122705 AK308698 BC038583
RefSeq transcript (Entrez)NM_001122646 NM_001172667 NM_016490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM178B
Cluster EST : UnigeneHs.107922 [ NCBI ]
CGAP (NCI)Hs.107922
Alternative Splicing GalleryENSG00000168754
Gene ExpressionFAM178B [ NCBI-GEO ]   FAM178B [ EBI - ARRAY_EXPRESS ]   FAM178B [ SEEK ]   FAM178B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM178B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51252
GTEX Portal (Tissue expression)FAM178B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXR5
Splice isoforms : SwissVarQ8IXR5
PhosPhoSitePlusQ8IXR5
Domains : Interpro (EBI)FAM178   
Domain families : Pfam (Sanger)FAM178 (PF14816)   
Domain families : Pfam (NCBI)pfam14816   
Conserved Domain (NCBI)FAM178B
DMDM Disease mutations51252
Blocks (Seattle)FAM178B
SuperfamilyQ8IXR5
Human Protein AtlasENSG00000168754
Peptide AtlasQ8IXR5
HPRD14235
IPIIPI00884898   IPI00217597   IPI00941784   IPI00956019   IPI00980820   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXR5
IntAct (EBI)Q8IXR5
FunCoupENSG00000168754
BioGRIDFAM178B
STRING (EMBL)FAM178B
ZODIACFAM178B
Ontologies - Pathways
QuickGOQ8IXR5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM178B
Atlas of Cancer Signalling NetworkFAM178B
Wikipedia pathwaysFAM178B
Orthology - Evolution
OrthoDB51252
GeneTree (enSembl)ENSG00000168754
Phylogenetic Trees/Animal Genes : TreeFamFAM178B
HOVERGENQ8IXR5
HOGENOMQ8IXR5
Homologs : HomoloGeneFAM178B
Homology/Alignments : Family Browser (UCSC)FAM178B
Gene fusions - Rearrangements
Fusion: TCGAATAD2 FAM178B
Fusion: TCGAANKRD39 FAM178B
Fusion: TCGALMAN2L FAM178B
Fusion: TCGASEMA4C FAM178B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM178B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM178B
dbVarFAM178B
ClinVarFAM178B
1000_GenomesFAM178B 
Exome Variant ServerFAM178B
ExAC (Exome Aggregation Consortium)FAM178B (select the gene name)
Genetic variants : HAPMAP51252
Genomic Variants (DGV)FAM178B [DGVbeta]
DECIPHERFAM178B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM178B 
Mutations
ICGC Data PortalFAM178B 
TCGA Data PortalFAM178B 
Broad Tumor PortalFAM178B
OASIS PortalFAM178B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM178B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM178B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM178B
DgiDB (Drug Gene Interaction Database)FAM178B
DoCM (Curated mutations)FAM178B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM178B (select a term)
intoGenFAM178B
Cancer3DFAM178B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM178B
Genetic Testing Registry FAM178B
NextProtQ8IXR5 [Medical]
TSGene51252
GENETestsFAM178B
Target ValidationFAM178B
Huge Navigator FAM178B [HugePedia]
snp3D : Map Gene to Disease51252
BioCentury BCIQFAM178B
ClinGenFAM178B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51252
Chemical/Pharm GKB GenePA162387456
Clinical trialFAM178B
Miscellaneous
canSAR (ICR)FAM178B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM178B
EVEXFAM178B
GoPubMedFAM178B
iHOPFAM178B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:43 CEST 2017

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