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FAM179A (family with sequence similarity 179, member A)

Identity

Alias_namesfamily with sequence similarity 179, member A
Alias_symbol (synonym)FLJ43249
LOC165186
Other alias-
HGNC (Hugo) FAM179A
LocusID (NCBI) 165186
Atlas_Id 63080
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 29204164 and ends at 29275096 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLIP4 (2p23.2) / FAM179A (2p23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM179A   33715
Cards
Entrez_Gene (NCBI)FAM179A  165186  family with sequence similarity 179, member A
Aliases
GeneCards (Weizmann)FAM179A
Ensembl hg19 (Hinxton) [Gene_View]  chr2:29204164-29275096 [Contig_View]  FAM179A [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:29204164-29275096 [Contig_View]  FAM179A [Vega]
TCGA cBioPortalFAM179A
AceView (NCBI)FAM179A
Genatlas (Paris)FAM179A
WikiGenes165186
SOURCE (Princeton)FAM179A
Genetics Home Reference (NIH)FAM179A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM179A  -     chr2:29204164-29275096 +  2p23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM179A  -     2p23.2   [Description]    (hg38-Dec_2013)
EnsemblFAM179A - 2p23.2 [CytoView hg19]  FAM179A - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBIFAM179A [Mapview hg19]  FAM179A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125239 AK125744 AK296977 BI768759 BQ772038
RefSeq transcript (Entrez)NM_199280
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)FAM179A
Cluster EST : UnigeneHs.525977 [ NCBI ]
CGAP (NCI)Hs.525977
Gene ExpressionFAM179A [ NCBI-GEO ]   FAM179A [ EBI - ARRAY_EXPRESS ]   FAM179A [ SEEK ]   FAM179A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM179A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165186
GTEX Portal (Tissue expression)FAM179A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUX3
Splice isoforms : SwissVarQ6ZUX3
PhosPhoSitePlusQ6ZUX3
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CLASP_N_dom   
Domain families : Pfam (Sanger)CLASP_N (PF12348)   
Domain families : Pfam (NCBI)pfam12348   
Conserved Domain (NCBI)FAM179A
DMDM Disease mutations165186
Blocks (Seattle)FAM179A
SuperfamilyQ6ZUX3
Peptide AtlasQ6ZUX3
HPRD14110
IPIIPI00445972   IPI00398169   IPI00888252   IPI00893638   IPI00894021   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUX3
IntAct (EBI)Q6ZUX3
BioGRIDFAM179A
STRING (EMBL)FAM179A
ZODIACFAM179A
Ontologies - Pathways
QuickGOQ6ZUX3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM179A
Atlas of Cancer Signalling NetworkFAM179A
Wikipedia pathwaysFAM179A
Orthology - Evolution
OrthoDB165186
Phylogenetic Trees/Animal Genes : TreeFamFAM179A
HOVERGENQ6ZUX3
HOGENOMQ6ZUX3
Homologs : HomoloGeneFAM179A
Homology/Alignments : Family Browser (UCSC)FAM179A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM179A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM179A
dbVarFAM179A
ClinVarFAM179A
1000_GenomesFAM179A 
Exome Variant ServerFAM179A
ExAC (Exome Aggregation Consortium)FAM179A (select the gene name)
Genetic variants : HAPMAP165186
Genomic Variants (DGV)FAM179A [DGVbeta]
DECIPHER (Syndromes)2:29204164-29275096  
CONAN: Copy Number AnalysisFAM179A 
Mutations
ICGC Data PortalFAM179A 
TCGA Data PortalFAM179A 
Broad Tumor PortalFAM179A
OASIS PortalFAM179A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM179A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM179A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM179A
DgiDB (Drug Gene Interaction Database)FAM179A
DoCM (Curated mutations)FAM179A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM179A (select a term)
intoGenFAM179A
Cancer3DFAM179A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM179A
Genetic Testing Registry FAM179A
NextProtQ6ZUX3 [Medical]
TSGene165186
GENETestsFAM179A
Huge Navigator FAM179A [HugePedia]
snp3D : Map Gene to Disease165186
BioCentury BCIQFAM179A
ClinGenFAM179A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165186
Chemical/Pharm GKB GenePA162387471
Clinical trialFAM179A
Miscellaneous
canSAR (ICR)FAM179A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM179A
EVEXFAM179A
GoPubMedFAM179A
iHOPFAM179A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:41 CET 2017

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