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FAM179B (family with sequence similarity 179, member B)

Identity

Alias_namesKIAA0423
KIAA0423
family with sequence similarity 179, member B
Other alias
HGNC (Hugo) FAM179B
LocusID (NCBI) 23116
Atlas_Id 63081
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 45431393 and ends at 45543634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NIN (14q22.1) / FAM179B (14q21.2)PRPF39 (14q21.2) / FAM179B (14q21.2)UBE2E2 (3p24.3) / FAM179B (14q21.2)
NIN FAM179BUBE2E2 FAM179BPRPF39 FAM179B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM179B   19959
Cards
Entrez_Gene (NCBI)FAM179B  23116  family with sequence similarity 179, member B
AliasesKIAA0423
GeneCards (Weizmann)FAM179B
Ensembl hg19 (Hinxton)ENSG00000198718 [Gene_View]  chr14:45431393-45543634 [Contig_View]  FAM179B [Vega]
Ensembl hg38 (Hinxton)ENSG00000198718 [Gene_View]  chr14:45431393-45543634 [Contig_View]  FAM179B [Vega]
ICGC DataPortalENSG00000198718
TCGA cBioPortalFAM179B
AceView (NCBI)FAM179B
Genatlas (Paris)FAM179B
WikiGenes23116
SOURCE (Princeton)FAM179B
Genetics Home Reference (NIH)FAM179B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM179B  -     chr14:45431393-45543634 +  14q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM179B  -     14q21.2   [Description]    (hg38-Dec_2013)
EnsemblFAM179B - 14q21.2 [CytoView hg19]  FAM179B - 14q21.2 [CytoView hg38]
Mapping of homologs : NCBIFAM179B [Mapview hg19]  FAM179B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA911186 AB007883 AK096934 AK295185 AK307722
RefSeq transcript (Entrez)NM_001308120 NM_015091
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)FAM179B
Cluster EST : UnigeneHs.371078 [ NCBI ]
CGAP (NCI)Hs.371078
Alternative Splicing GalleryENSG00000198718
Gene ExpressionFAM179B [ NCBI-GEO ]   FAM179B [ EBI - ARRAY_EXPRESS ]   FAM179B [ SEEK ]   FAM179B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM179B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23116
GTEX Portal (Tissue expression)FAM179B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4F4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4F4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4F4
Splice isoforms : SwissVarQ9Y4F4
PhosPhoSitePlusQ9Y4F4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    FAM179B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM179B
DMDM Disease mutations23116
Blocks (Seattle)FAM179B
SuperfamilyQ9Y4F4
Human Protein AtlasENSG00000198718
Peptide AtlasQ9Y4F4
HPRD11082
IPIIPI00744872   IPI00748234   IPI00439761   IPI01010012   IPI01026034   IPI01025909   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4F4
IntAct (EBI)Q9Y4F4
FunCoupENSG00000198718
BioGRIDFAM179B
STRING (EMBL)FAM179B
ZODIACFAM179B
Ontologies - Pathways
QuickGOQ9Y4F4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM179B
Atlas of Cancer Signalling NetworkFAM179B
Wikipedia pathwaysFAM179B
Orthology - Evolution
OrthoDB23116
GeneTree (enSembl)ENSG00000198718
Phylogenetic Trees/Animal Genes : TreeFamFAM179B
HOVERGENQ9Y4F4
HOGENOMQ9Y4F4
Homologs : HomoloGeneFAM179B
Homology/Alignments : Family Browser (UCSC)FAM179B
Gene fusions - Rearrangements
Fusion: TCGANIN FAM179B
Fusion: TCGAUBE2E2 FAM179B
Fusion: TCGAPRPF39 FAM179B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM179B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM179B
dbVarFAM179B
ClinVarFAM179B
1000_GenomesFAM179B 
Exome Variant ServerFAM179B
ExAC (Exome Aggregation Consortium)FAM179B (select the gene name)
Genetic variants : HAPMAP23116
Genomic Variants (DGV)FAM179B [DGVbeta]
DECIPHER (Syndromes)14:45431393-45543634  ENSG00000198718
CONAN: Copy Number AnalysisFAM179B 
Mutations
ICGC Data PortalFAM179B 
TCGA Data PortalFAM179B 
Broad Tumor PortalFAM179B
OASIS PortalFAM179B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM179B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM179B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM179B
DgiDB (Drug Gene Interaction Database)FAM179B
DoCM (Curated mutations)FAM179B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM179B (select a term)
intoGenFAM179B
Cancer3DFAM179B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM179B
Genetic Testing Registry FAM179B
NextProtQ9Y4F4 [Medical]
TSGene23116
GENETestsFAM179B
Huge Navigator FAM179B [HugePedia]
snp3D : Map Gene to Disease23116
BioCentury BCIQFAM179B
ClinGenFAM179B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23116
Chemical/Pharm GKB GenePA162387516
Clinical trialFAM179B
Miscellaneous
canSAR (ICR)FAM179B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM179B
EVEXFAM179B
GoPubMedFAM179B
iHOPFAM179B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:42 CET 2017

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