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FAM180A (family with sequence similarity 180 member A)

Identity

Alias_namesfamily with sequence similarity 180, member A
Alias_symbol (synonym)HWKM1940
UNQ1940
Other alias
HGNC (Hugo) FAM180A
LocusID (NCBI) 389558
Atlas_Id 63082
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 135729598 and ends at 135748846 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM180A   33773
Cards
Entrez_Gene (NCBI)FAM180A  389558  family with sequence similarity 180 member A
AliasesUNQ1940
GeneCards (Weizmann)FAM180A
Ensembl hg19 (Hinxton)ENSG00000189320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189320 [Gene_View]  chr7:135729598-135748846 [Contig_View]  FAM180A [Vega]
ICGC DataPortalENSG00000189320
TCGA cBioPortalFAM180A
AceView (NCBI)FAM180A
Genatlas (Paris)FAM180A
WikiGenes389558
SOURCE (Princeton)FAM180A
Genetics Home Reference (NIH)FAM180A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM180A  -     chr7:135729598-135748846 -  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM180A  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblFAM180A - 7q33 [CytoView hg19]  FAM180A - 7q33 [CytoView hg38]
Mapping of homologs : NCBIFAM180A [Mapview hg19]  FAM180A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK290250 AK297754 AK310180 AL597791 AY358803
RefSeq transcript (Entrez)NM_205855
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM180A
Cluster EST : UnigeneHs.55200 [ NCBI ]
CGAP (NCI)Hs.55200
Alternative Splicing GalleryENSG00000189320
Gene ExpressionFAM180A [ NCBI-GEO ]   FAM180A [ EBI - ARRAY_EXPRESS ]   FAM180A [ SEEK ]   FAM180A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM180A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389558
GTEX Portal (Tissue expression)FAM180A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWF9
Splice isoforms : SwissVarQ6UWF9
PhosPhoSitePlusQ6UWF9
Domains : Interpro (EBI)FAM180   
Domain families : Pfam (Sanger)FAM180 (PF15173)   
Domain families : Pfam (NCBI)pfam15173   
Conserved Domain (NCBI)FAM180A
DMDM Disease mutations389558
Blocks (Seattle)FAM180A
SuperfamilyQ6UWF9
Human Protein AtlasENSG00000189320
Peptide AtlasQ6UWF9
HPRD15613
IPIIPI00374376   IPI00925236   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWF9
IntAct (EBI)Q6UWF9
FunCoupENSG00000189320
BioGRIDFAM180A
STRING (EMBL)FAM180A
ZODIACFAM180A
Ontologies - Pathways
QuickGOQ6UWF9
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkFAM180A
Atlas of Cancer Signalling NetworkFAM180A
Wikipedia pathwaysFAM180A
Orthology - Evolution
OrthoDB389558
GeneTree (enSembl)ENSG00000189320
Phylogenetic Trees/Animal Genes : TreeFamFAM180A
HOVERGENQ6UWF9
HOGENOMQ6UWF9
Homologs : HomoloGeneFAM180A
Homology/Alignments : Family Browser (UCSC)FAM180A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM180A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM180A
dbVarFAM180A
ClinVarFAM180A
1000_GenomesFAM180A 
Exome Variant ServerFAM180A
ExAC (Exome Aggregation Consortium)FAM180A (select the gene name)
Genetic variants : HAPMAP389558
Genomic Variants (DGV)FAM180A [DGVbeta]
DECIPHERFAM180A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM180A 
Mutations
ICGC Data PortalFAM180A 
TCGA Data PortalFAM180A 
Broad Tumor PortalFAM180A
OASIS PortalFAM180A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM180A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM180A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM180A
DgiDB (Drug Gene Interaction Database)FAM180A
DoCM (Curated mutations)FAM180A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM180A (select a term)
intoGenFAM180A
Cancer3DFAM180A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM180A
Genetic Testing Registry FAM180A
NextProtQ6UWF9 [Medical]
TSGene389558
GENETestsFAM180A
Target ValidationFAM180A
Huge Navigator FAM180A [HugePedia]
snp3D : Map Gene to Disease389558
BioCentury BCIQFAM180A
ClinGenFAM180A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389558
Chemical/Pharm GKB GenePA162387559
Clinical trialFAM180A
Miscellaneous
canSAR (ICR)FAM180A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM180A
EVEXFAM180A
GoPubMedFAM180A
iHOPFAM180A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:43 CEST 2017

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