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FAM180B (family with sequence similarity 180 member B)

Identity

Alias_namesfamily with sequence similarity 180, member B
Alias_symbol (synonym)LOC399888
Other alias-
HGNC (Hugo) FAM180B
LocusID (NCBI) 399888
Atlas_Id 63083
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47586678 and ends at 47589194 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM180B   34451
Cards
Entrez_Gene (NCBI)FAM180B  399888  family with sequence similarity 180 member B
Aliases
GeneCards (Weizmann)FAM180B
Ensembl hg19 (Hinxton)ENSG00000196666 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196666 [Gene_View]  chr11:47586678-47589194 [Contig_View]  FAM180B [Vega]
ICGC DataPortalENSG00000196666
TCGA cBioPortalFAM180B
AceView (NCBI)FAM180B
Genatlas (Paris)FAM180B
WikiGenes399888
SOURCE (Princeton)FAM180B
Genetics Home Reference (NIH)FAM180B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM180B  -     chr11:47586678-47589194 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM180B  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblFAM180B - 11p11.2 [CytoView hg19]  FAM180B - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM180B [Mapview hg19]  FAM180B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC065704 CB999847
RefSeq transcript (Entrez)NM_001164379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM180B
Cluster EST : UnigeneHs.502529 [ NCBI ]
CGAP (NCI)Hs.502529
Alternative Splicing GalleryENSG00000196666
Gene ExpressionFAM180B [ NCBI-GEO ]   FAM180B [ EBI - ARRAY_EXPRESS ]   FAM180B [ SEEK ]   FAM180B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM180B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399888
GTEX Portal (Tissue expression)FAM180B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P0A1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P0A1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P0A1
Splice isoforms : SwissVarQ6P0A1
PhosPhoSitePlusQ6P0A1
Domains : Interpro (EBI)FAM180   
Domain families : Pfam (Sanger)FAM180 (PF15173)   
Domain families : Pfam (NCBI)pfam15173   
Conserved Domain (NCBI)FAM180B
DMDM Disease mutations399888
Blocks (Seattle)FAM180B
SuperfamilyQ6P0A1
Human Protein AtlasENSG00000196666
Peptide AtlasQ6P0A1
IPIIPI00418256   
Protein Interaction databases
DIP (DOE-UCLA)Q6P0A1
IntAct (EBI)Q6P0A1
FunCoupENSG00000196666
BioGRIDFAM180B
STRING (EMBL)FAM180B
ZODIACFAM180B
Ontologies - Pathways
QuickGOQ6P0A1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFAM180B
Atlas of Cancer Signalling NetworkFAM180B
Wikipedia pathwaysFAM180B
Orthology - Evolution
OrthoDB399888
GeneTree (enSembl)ENSG00000196666
Phylogenetic Trees/Animal Genes : TreeFamFAM180B
HOVERGENQ6P0A1
HOGENOMQ6P0A1
Homologs : HomoloGeneFAM180B
Homology/Alignments : Family Browser (UCSC)FAM180B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM180B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM180B
dbVarFAM180B
ClinVarFAM180B
1000_GenomesFAM180B 
Exome Variant ServerFAM180B
ExAC (Exome Aggregation Consortium)FAM180B (select the gene name)
Genetic variants : HAPMAP399888
Genomic Variants (DGV)FAM180B [DGVbeta]
DECIPHERFAM180B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM180B 
Mutations
ICGC Data PortalFAM180B 
TCGA Data PortalFAM180B 
Broad Tumor PortalFAM180B
OASIS PortalFAM180B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM180B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM180B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM180B
DgiDB (Drug Gene Interaction Database)FAM180B
DoCM (Curated mutations)FAM180B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM180B (select a term)
intoGenFAM180B
Cancer3DFAM180B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM180B
Genetic Testing Registry FAM180B
NextProtQ6P0A1 [Medical]
TSGene399888
GENETestsFAM180B
Target ValidationFAM180B
Huge Navigator FAM180B [HugePedia]
snp3D : Map Gene to Disease399888
BioCentury BCIQFAM180B
ClinGenFAM180B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399888
Chemical/Pharm GKB GenePA162387572
Clinical trialFAM180B
Miscellaneous
canSAR (ICR)FAM180B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM180B
EVEXFAM180B
GoPubMedFAM180B
iHOPFAM180B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:14:47 CEST 2017

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