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FAM182A (family with sequence similarity 182 member A)

Identity

Alias_namesC20orf91
chromosome 20 open reading frame 91
family with sequence similarity 182, member A
Alias_symbol (synonym)bB329D4.1
C20orf91A
Other alias
HGNC (Hugo) FAM182A
LocusID (NCBI) 284800
Atlas_Id 63087
Location 20p11.1  [Link to chromosome band 20p11]
Location_base_pair Starts at 26054655 and ends at 26086557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM182A (20p11.1) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM182A   16222
Cards
Entrez_Gene (NCBI)FAM182A  284800  family with sequence similarity 182 member A
AliasesC20orf91; C20orf91A; bB329D4.1
GeneCards (Weizmann)FAM182A
Ensembl hg19 (Hinxton)ENSG00000125804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125804 [Gene_View]  chr20:26054655-26086557 [Contig_View]  FAM182A [Vega]
ICGC DataPortalENSG00000125804
TCGA cBioPortalFAM182A
AceView (NCBI)FAM182A
Genatlas (Paris)FAM182A
WikiGenes284800
SOURCE (Princeton)FAM182A
Genetics Home Reference (NIH)FAM182A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM182A  -     chr20:26054655-26086557 +  20p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM182A  -     20p11.1   [Description]    (hg19-Feb_2009)
EnsemblFAM182A - 20p11.1 [CytoView hg19]  FAM182A - 20p11.1 [CytoView hg38]
Mapping of homologs : NCBIFAM182A [Mapview hg19]  FAM182A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095693 BC131537
RefSeq transcript (Entrez)NM_182583
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM182A
Cluster EST : UnigeneHs.516956 [ NCBI ]
CGAP (NCI)Hs.516956
Alternative Splicing GalleryENSG00000125804
Gene ExpressionFAM182A [ NCBI-GEO ]   FAM182A [ EBI - ARRAY_EXPRESS ]   FAM182A [ SEEK ]   FAM182A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM182A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284800
GTEX Portal (Tissue expression)FAM182A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1J6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1J6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1J6
Splice isoforms : SwissVarQ5T1J6
PhosPhoSitePlusQ5T1J6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM182A
DMDM Disease mutations284800
Blocks (Seattle)FAM182A
SuperfamilyQ5T1J6
Human Protein AtlasENSG00000125804
Peptide AtlasQ5T1J6
HPRD08240
IPIIPI00172528   IPI00941378   IPI00790303   IPI00783409   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1J6
IntAct (EBI)Q5T1J6
FunCoupENSG00000125804
BioGRIDFAM182A
STRING (EMBL)FAM182A
ZODIACFAM182A
Ontologies - Pathways
QuickGOQ5T1J6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM182A
Atlas of Cancer Signalling NetworkFAM182A
Wikipedia pathwaysFAM182A
Orthology - Evolution
OrthoDB284800
GeneTree (enSembl)ENSG00000125804
Phylogenetic Trees/Animal Genes : TreeFamFAM182A
HOVERGENQ5T1J6
HOGENOMQ5T1J6
Homologs : HomoloGeneFAM182A
Homology/Alignments : Family Browser (UCSC)FAM182A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM182A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM182A
dbVarFAM182A
ClinVarFAM182A
1000_GenomesFAM182A 
Exome Variant ServerFAM182A
ExAC (Exome Aggregation Consortium)FAM182A (select the gene name)
Genetic variants : HAPMAP284800
Genomic Variants (DGV)FAM182A [DGVbeta]
DECIPHERFAM182A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM182A 
Mutations
ICGC Data PortalFAM182A 
TCGA Data PortalFAM182A 
Broad Tumor PortalFAM182A
OASIS PortalFAM182A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM182A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM182A
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch FAM182A
DgiDB (Drug Gene Interaction Database)FAM182A
DoCM (Curated mutations)FAM182A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM182A (select a term)
intoGenFAM182A
Cancer3DFAM182A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM182A
Genetic Testing Registry FAM182A
NextProtQ5T1J6 [Medical]
TSGene284800
GENETestsFAM182A
Target ValidationFAM182A
Huge Navigator FAM182A [HugePedia]
snp3D : Map Gene to Disease284800
BioCentury BCIQFAM182A
ClinGenFAM182A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284800
Chemical/Pharm GKB GenePA162387600
Clinical trialFAM182A
Miscellaneous
canSAR (ICR)FAM182A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM182A
EVEXFAM182A
GoPubMedFAM182A
iHOPFAM182A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:44 CEST 2017

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