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FAM183A (family with sequence similarity 183 member A)

Identity

Alias_namesfamily with sequence similarity 183, member A
Alias_symbol (synonym)LOC440585
hCG23177
Other alias-
HGNC (Hugo) FAM183A
LocusID (NCBI) 440585
Atlas_Id 63089
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43147923 and ends at 43156396 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ECE1 (1p36.12) / FAM183A (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM183A   34347
Cards
Entrez_Gene (NCBI)FAM183A  440585  family with sequence similarity 183 member A
Aliases
GeneCards (Weizmann)FAM183A
Ensembl hg19 (Hinxton)ENSG00000186973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186973 [Gene_View]  chr1:43147923-43156396 [Contig_View]  FAM183A [Vega]
ICGC DataPortalENSG00000186973
TCGA cBioPortalFAM183A
AceView (NCBI)FAM183A
Genatlas (Paris)FAM183A
WikiGenes440585
SOURCE (Princeton)FAM183A
Genetics Home Reference (NIH)FAM183A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM183A  -     chr1:43147923-43156396 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM183A  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblFAM183A - 1p34.2 [CytoView hg19]  FAM183A - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIFAM183A [Mapview hg19]  FAM183A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI192630 AI375550 AK309744
RefSeq transcript (Entrez)NM_001101376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM183A
Cluster EST : UnigeneHs.735542 [ NCBI ]
CGAP (NCI)Hs.735542
Alternative Splicing GalleryENSG00000186973
Gene ExpressionFAM183A [ NCBI-GEO ]   FAM183A [ EBI - ARRAY_EXPRESS ]   FAM183A [ SEEK ]   FAM183A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM183A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440585
GTEX Portal (Tissue expression)FAM183A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NL82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NL82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NL82
Splice isoforms : SwissVarA6NL82
PhosPhoSitePlusA6NL82
Domains : Interpro (EBI)FAM183   
Domain families : Pfam (Sanger)FAM183 (PF14886)   
Domain families : Pfam (NCBI)pfam14886   
Conserved Domain (NCBI)FAM183A
DMDM Disease mutations440585
Blocks (Seattle)FAM183A
SuperfamilyA6NL82
Human Protein AtlasENSG00000186973
Peptide AtlasA6NL82
IPIIPI00869340   IPI00915757   IPI00916404   IPI00916277   IPI00917631   
Protein Interaction databases
DIP (DOE-UCLA)A6NL82
IntAct (EBI)A6NL82
FunCoupENSG00000186973
BioGRIDFAM183A
STRING (EMBL)FAM183A
ZODIACFAM183A
Ontologies - Pathways
QuickGOA6NL82
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM183A
Atlas of Cancer Signalling NetworkFAM183A
Wikipedia pathwaysFAM183A
Orthology - Evolution
OrthoDB440585
GeneTree (enSembl)ENSG00000186973
Phylogenetic Trees/Animal Genes : TreeFamFAM183A
HOVERGENA6NL82
HOGENOMA6NL82
Homologs : HomoloGeneFAM183A
Homology/Alignments : Family Browser (UCSC)FAM183A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM183A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM183A
dbVarFAM183A
ClinVarFAM183A
1000_GenomesFAM183A 
Exome Variant ServerFAM183A
ExAC (Exome Aggregation Consortium)FAM183A (select the gene name)
Genetic variants : HAPMAP440585
Genomic Variants (DGV)FAM183A [DGVbeta]
DECIPHERFAM183A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM183A 
Mutations
ICGC Data PortalFAM183A 
TCGA Data PortalFAM183A 
Broad Tumor PortalFAM183A
OASIS PortalFAM183A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM183A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM183A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM183A
DgiDB (Drug Gene Interaction Database)FAM183A
DoCM (Curated mutations)FAM183A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM183A (select a term)
intoGenFAM183A
Cancer3DFAM183A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM183A
Genetic Testing Registry FAM183A
NextProtA6NL82 [Medical]
TSGene440585
GENETestsFAM183A
Huge Navigator FAM183A [HugePedia]
snp3D : Map Gene to Disease440585
BioCentury BCIQFAM183A
ClinGenFAM183A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440585
Chemical/Pharm GKB GenePA164719746
Clinical trialFAM183A
Miscellaneous
canSAR (ICR)FAM183A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM183A
EVEXFAM183A
GoPubMedFAM183A
iHOPFAM183A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:10:51 CEST 2017

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