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FAM184A (family with sequence similarity 184 member A)

Identity

Alias_namesC6orf60
chromosome 6 open reading frame 60
family with sequence similarity 184, member A
Alias_symbol (synonym)FLJ13942
Other alias
HGNC (Hugo) FAM184A
LocusID (NCBI) 79632
Atlas_Id 63091
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 118959829 and ends at 119149193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AK9 (6q21) / FAM184A (6q22.31)FAM184A (6q22.31) / FAM184A (6q22.31)FAM184A (6q22.31) / HNRNPAB (5q35.3)
FAM184A (6q22.31) / MCM9 (6q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q22) AK9/FAM184A


External links

Nomenclature
HGNC (Hugo)FAM184A   20991
Cards
Entrez_Gene (NCBI)FAM184A  79632  family with sequence similarity 184 member A
AliasesC6orf60
GeneCards (Weizmann)FAM184A
Ensembl hg19 (Hinxton)ENSG00000111879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111879 [Gene_View]  ENSG00000111879 [Sequence]  chr6:118959829-119149193 [Contig_View]  FAM184A [Vega]
ICGC DataPortalENSG00000111879
TCGA cBioPortalFAM184A
AceView (NCBI)FAM184A
Genatlas (Paris)FAM184A
WikiGenes79632
SOURCE (Princeton)FAM184A
Genetics Home Reference (NIH)FAM184A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM184A  -     chr6:118959829-119149193 -  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM184A  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblFAM184A - 6q22.31 [CytoView hg19]  FAM184A - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM184A [Mapview hg19]  FAM184A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI457286 AJ420503 AJ420563 AK024004 AK091682
RefSeq transcript (Entrez)NM_001100411 NM_001288576 NM_024581
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM184A
Cluster EST : UnigeneHs.443789 [ NCBI ]
CGAP (NCI)Hs.443789
Alternative Splicing GalleryENSG00000111879
Gene ExpressionFAM184A [ NCBI-GEO ]   FAM184A [ EBI - ARRAY_EXPRESS ]   FAM184A [ SEEK ]   FAM184A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM184A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79632
GTEX Portal (Tissue expression)FAM184A
Human Protein AtlasENSG00000111879-FAM184A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB25
Splice isoforms : SwissVarQ8NB25
PhosPhoSitePlusQ8NB25
Domains : Interpro (EBI)FAM184    FAM184A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM184A
DMDM Disease mutations79632
Blocks (Seattle)FAM184A
SuperfamilyQ8NB25
Human Protein Atlas [tissue]ENSG00000111879-FAM184A [tissue]
Peptide AtlasQ8NB25
HPRD09856
IPIIPI00874044   IPI00647504   IPI00914049   IPI00921260   IPI00552745   IPI00973264   IPI00982410   IPI00746850   IPI00974096   IPI00871942   IPI00975730   IPI00977986   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB25
IntAct (EBI)Q8NB25
FunCoupENSG00000111879
BioGRIDFAM184A
STRING (EMBL)FAM184A
ZODIACFAM184A
Ontologies - Pathways
QuickGOQ8NB25
Ontology : AmiGOmolecular_function  protein binding  extracellular space  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  extracellular space  biological_process  
NDEx NetworkFAM184A
Atlas of Cancer Signalling NetworkFAM184A
Wikipedia pathwaysFAM184A
Orthology - Evolution
OrthoDB79632
GeneTree (enSembl)ENSG00000111879
Phylogenetic Trees/Animal Genes : TreeFamFAM184A
HOVERGENQ8NB25
HOGENOMQ8NB25
Homologs : HomoloGeneFAM184A
Homology/Alignments : Family Browser (UCSC)FAM184A
Gene fusions - Rearrangements
Fusion : QuiverFAM184A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM184A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM184A
dbVarFAM184A
ClinVarFAM184A
1000_GenomesFAM184A 
Exome Variant ServerFAM184A
ExAC (Exome Aggregation Consortium)ENSG00000111879
GNOMAD BrowserENSG00000111879
Varsome BrowserFAM184A
Genetic variants : HAPMAP79632
Genomic Variants (DGV)FAM184A [DGVbeta]
DECIPHERFAM184A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM184A 
Mutations
ICGC Data PortalFAM184A 
TCGA Data PortalFAM184A 
Broad Tumor PortalFAM184A
OASIS PortalFAM184A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM184A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM184A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM184A
DgiDB (Drug Gene Interaction Database)FAM184A
DoCM (Curated mutations)FAM184A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM184A (select a term)
intoGenFAM184A
Cancer3DFAM184A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM184A
MedgenFAM184A
Genetic Testing Registry FAM184A
NextProtQ8NB25 [Medical]
TSGene79632
GENETestsFAM184A
Target ValidationFAM184A
Huge Navigator FAM184A [HugePedia]
snp3D : Map Gene to Disease79632
BioCentury BCIQFAM184A
ClinGenFAM184A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79632
Chemical/Pharm GKB GenePA164719768
Clinical trialFAM184A
Miscellaneous
canSAR (ICR)FAM184A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM184A
EVEXFAM184A
GoPubMedFAM184A
iHOPFAM184A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:44:52 CEST 2018

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